cgd2_1820 | Uncharacterized protein with RING-type Zinc finger

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0046872      

  • Computed_GO_Functions:  metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd2_1820OTHER0.9995610.0004180.000021
No Results

  • Fasta :-

    >cgd2_1820 MGEVNNISNSEIDAKGSGLNGEQSDHHHRSEEKSKNYTSFECNICFENAYEPIVTRCGHL YCWSCICSWLDRGYEDCPVCKAGVNSENVIPLYGRGNENVDPRKKTKPRPKAERPEARQR NQNIGGHNGYFHNADFGFGINNTPLITVFANPLGALLSLGYTHRYFIPEFANSRQSDNSK FSLKYIIIITLLQMKNLEIS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd2_1820.fa Sequence name : cgd2_1820 Sequence length : 200 VALUES OF COMPUTED PARAMETERS Coef20 : 3.124 CoefTot : -0.250 ChDiff : 0 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.494 1.494 0.218 0.634 MesoH : -0.401 0.174 -0.404 0.231 MuHd_075 : 8.277 8.688 4.340 3.558 MuHd_095 : 9.358 12.011 2.596 2.270 MuHd_100 : 9.989 12.899 2.800 2.627 MuHd_105 : 15.205 14.138 4.320 3.124 Hmax_075 : 1.200 3.100 -0.418 2.660 Hmax_095 : 1.100 4.600 -2.107 1.960 Hmax_100 : -0.500 2.300 -2.668 1.940 Hmax_105 : 4.100 7.700 -0.306 3.320 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9677 0.0323 DFMC : 0.9806 0.0194
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 200 cgd2_1820 MGEVNNISNSEIDAKGSGLNGEQSDHHHRSEEKSKNYTSFECNICFENAYEPIVTRCGHLYCWSCICSWLDRGYEDCPVC 80 KAGVNSENVIPLYGRGNENVDPRKKTKPRPKAERPEARQRNQNIGGHNGYFHNADFGFGINNTPLITVFANPLGALLSLG 160 YTHRYFIPEFANSRQSDNSKFSLKYIIIITLLQMKNLEIS 240 ................................................................................ 80 ................................................................................ 160 ........................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd2_1820 15 NSEIDAK|GS 0.082 . cgd2_1820 29 QSDHHHR|SE 0.159 . cgd2_1820 33 HHRSEEK|SK 0.069 . cgd2_1820 35 RSEEKSK|NY 0.076 . cgd2_1820 56 YEPIVTR|CG 0.072 . cgd2_1820 72 ICSWLDR|GY 0.128 . cgd2_1820 81 EDCPVCK|AG 0.065 . cgd2_1820 95 VIPLYGR|GN 0.089 . cgd2_1820 103 NENVDPR|KK 0.095 . cgd2_1820 104 ENVDPRK|KT 0.079 . cgd2_1820 105 NVDPRKK|TK 0.065 . cgd2_1820 107 DPRKKTK|PR 0.079 . cgd2_1820 109 RKKTKPR|PK 0.103 . cgd2_1820 111 KTKPRPK|AE 0.071 . cgd2_1820 114 PRPKAER|PE 0.100 . cgd2_1820 118 AERPEAR|QR 0.136 . cgd2_1820 120 RPEARQR|NQ 0.112 . cgd2_1820 164 SLGYTHR|YF 0.123 . cgd2_1820 174 PEFANSR|QS 0.080 . cgd2_1820 180 RQSDNSK|FS 0.078 . cgd2_1820 184 NSKFSLK|YI 0.076 . cgd2_1820 195 ITLLQMK|NL 0.065 . ____________________________^_________________

  • Fasta :-

    >cgd2_1820 ATGGGAGAGGTAAATAACATTTCAAATAGTGAGATTGACGCAAAAGGCAGCGGATTGAAC GGAGAACAGTCTGATCACCATCATAGATCTGAAGAGAAGTCAAAAAACTATACTAGTTTT GAATGCAATATTTGTTTTGAAAATGCATATGAGCCTATCGTGACAAGATGTGGTCACCTA TATTGTTGGAGCTGTATTTGTTCCTGGCTAGATAGAGGTTATGAAGACTGCCCAGTTTGC AAGGCTGGAGTTAATTCAGAGAATGTAATTCCATTATACGGTAGAGGTAATGAAAATGTT GATCCTAGAAAAAAAACAAAGCCAAGACCGAAGGCTGAAAGGCCGGAGGCTAGACAACGT AATCAAAATATTGGGGGGCATAATGGATATTTTCACAATGCAGATTTTGGGTTTGGAATT AATAATACTCCACTAATAACGGTGTTCGCAAATCCTTTAGGTGCTCTTTTGAGCTTGGGT TACACCCATCGTTACTTCATTCCCGAATTTGCAAATAGCAGACAATCAGACAACAGTAAG TTTTCACTCAAATACATTATAATCATTACGCTTCTTCAGATGAAGAACTTAGAAATAAGT TAA
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  • Fasta :-

    MGEVNNISNSEIDAKGSGLNGEQSDHHHRSEEKSKNYTSFECNICFENAYEPIVTRCGHL YCWSCICSWLDRGYEDCPVCKAGVNSENVIPLYGRGNENVDPRKKTKPRPKAERPEARQR NQNIGGHNGYFHNADFGFGINNTPLITVFANPLGALLSLGYTHRYFIPEFANSRQSDNSK FSLKYIIIITLLQMKNLEIS

  • title: Zn binding site
  • coordinates: C42,C45,C57,H59,C62,C65,C77,C80
No Results
No Results
IDSitePeptideScoreMethod
cgd2_182010 SNISNSEIDA0.993unsp

cgd2_1820      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India