cgd2_860 | Proteasome subunit beta type

_IDPredictionOTHERSPmTPCS_Position
cgd2_860OTHER0.9999640.0000210.000015
No Results

  • Fasta :-

    >cgd2_860 MELDFLNGEIETGTTIVALKYKDGLVLAADGRTSTGPIIAFRAARKITQITDKVFMCRSG SAADTQIISRYVRRIVQDHELETGEDTKVKSVASVARLISYQNKEHLLADMIIAGMDPNG EFKVFRIPLGGTLIEGSYAISGSGSGYIYSMLDSKYHSEMDLDECKSFARDLVSHAMFRD SSSGGIIRIIVINKSGVEEFVVPGEDVPNL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd2_860.fa Sequence name : cgd2_860 Sequence length : 210 VALUES OF COMPUTED PARAMETERS Coef20 : 3.543 CoefTot : 0.000 ChDiff : -6 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.112 1.294 0.109 0.470 MesoH : -0.636 0.198 -0.363 0.198 MuHd_075 : 7.447 7.075 1.425 1.402 MuHd_095 : 11.270 12.924 3.126 3.835 MuHd_100 : 9.935 14.124 3.656 3.796 MuHd_105 : 9.838 14.297 4.280 3.513 Hmax_075 : 17.967 13.533 2.323 4.947 Hmax_095 : 6.825 11.813 0.735 4.384 Hmax_100 : 9.300 13.900 1.134 4.490 Hmax_105 : 17.967 23.800 4.747 7.677 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9861 0.0139 DFMC : 0.9889 0.0111
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 210 cgd2_860 MELDFLNGEIETGTTIVALKYKDGLVLAADGRTSTGPIIAFRAARKITQITDKVFMCRSGSAADTQIISRYVRRIVQDHE 80 LETGEDTKVKSVASVARLISYQNKEHLLADMIIAGMDPNGEFKVFRIPLGGTLIEGSYAISGSGSGYIYSMLDSKYHSEM 160 DLDECKSFARDLVSHAMFRDSSSGGIIRIIVINKSGVEEFVVPGEDVPNL 240 ................................................................................ 80 ................................................................................ 160 .................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd2_860 20 TTIVALK|YK 0.067 . cgd2_860 22 IVALKYK|DG 0.065 . cgd2_860 32 VLAADGR|TS 0.077 . cgd2_860 42 GPIIAFR|AA 0.141 . cgd2_860 45 IAFRAAR|KI 0.406 . cgd2_860 46 AFRAARK|IT 0.086 . cgd2_860 53 ITQITDK|VF 0.058 . cgd2_860 58 DKVFMCR|SG 0.162 . cgd2_860 70 DTQIISR|YV 0.123 . cgd2_860 73 IISRYVR|RI 0.248 . cgd2_860 74 ISRYVRR|IV 0.351 . cgd2_860 88 ETGEDTK|VK 0.059 . cgd2_860 90 GEDTKVK|SV 0.111 . cgd2_860 97 SVASVAR|LI 0.142 . cgd2_860 104 LISYQNK|EH 0.066 . cgd2_860 123 DPNGEFK|VF 0.066 . cgd2_860 126 GEFKVFR|IP 0.096 . cgd2_860 155 YSMLDSK|YH 0.068 . cgd2_860 166 MDLDECK|SF 0.072 . cgd2_860 170 ECKSFAR|DL 0.103 . cgd2_860 179 VSHAMFR|DS 0.165 . cgd2_860 188 SSGGIIR|II 0.094 . cgd2_860 194 RIIVINK|SG 0.072 . ____________________________^_________________

  • Fasta :-

    >cgd2_860 AATATATTTTCCCATAATTTATTCTGTGAACCTCTTTGGCGCAATTTTGAATTAGTGTGC TTAATAAACGAATTTAAAATAAGTAAGAAAGCTAGAACAAAGGATCAGAAAATCATGGAA CTGGATTTTTTGAATGGAGAAATTGAGACAGGAACCACAATTGTGGCATTGAAATACAAG GATGGGTTGGTTCTAGCAGCAGATGGAAGAACCTCCACTGGACCAATTATTGCTTTTAGA GCAGCAAGGAAGATAACTCAAATTACTGATAAAGTATTTATGTGCCGTTCTGGATCTGCA GCAGACACCCAAATTATTTCTAGATATGTACGCCGAATTGTTCAGGATCACGAGCTTGAG ACTGGCGAAGATACAAAAGTGAAGTCTGTCGCTTCTGTTGCTAGATTGATATCATATCAG AATAAAGAACACTTATTAGCAGATATGATCATTGCAGGAATGGATCCAAATGGTGAATTT AAAGTTTTCAGGATCCCATTGGGGGGAACTTTGATTGAAGGTTCATATGCAATATCAGGA TCAGGATCAGGCTATATTTACTCTATGTTAGACTCTAAGTACCATTCAGAAATGGACCTT GATGAATGTAAATCTTTTGCTAGGGATTTAGTTTCCCACGCTATGTTCAGAGACTCTTCT TCTGGTGGCATTATCAGAATTATAGTCATTAACAAGAGTGGAGTGGAGGAATTTGTAGTT CCTGGAGAAGACGTTCCTAACCTATAA
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  • Fasta :-

    MELDFLNGEIETGTTIVALKYKDGLVLAADGRTSTGPIIAFRAARKITQITDKVFMCRSG SAADTQIISRYVRRIVQDHELETGEDTKVKSVASVARLISYQNKEHLLADMIIAGMDPNG EFKVFRIPLGGTLIEGSYAISGSGSGYIYSMLDSKYHSEMDLDECKSFARDLVSHAMFRD SSSGGIIRIIVINKSGVEEFVVPGEDVPNL

  • title: active site
  • coordinates: T14,D30,R32,K46,S143,D180,S183,G184
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd2_86061 SCRSGSAADT0.992unspcgd2_860158 SSKYHSEMDL0.997unsp

cgd2_860      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India