cgd3_2170 | Proteasome endopeptidase complex

_IDPredictionOTHERSPmTPCS_Position
cgd3_2170OTHER0.9979880.0003460.001666
No Results

  • Fasta :-

    >cgd3_2170 MSRLSQSLHDRHITIFSPEGKLYQIEYTFRAVKNSNITAIAIKGKDTVCIVCEKKVPNQQ GQQDKLLDPAYVTSLYKVRKHIGAVMLGLAPDCRSIISKCREIAGKFAFEKGVEIPVSYL SHKIADVNQLYTQHASMRLLGASGMFISIDDEDGPSLYKIDPAGYFASYRACAVGTKERE GNNALEKIIKNEPLNSCEEVISASIDCLKTLLGVDFKAEDIEVGVVTKDMPEFRLLSVEE IDNYLTNIAERD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd3_2170.fa Sequence name : cgd3_2170 Sequence length : 252 VALUES OF COMPUTED PARAMETERS Coef20 : 3.852 CoefTot : 0.321 ChDiff : -4 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.582 1.312 0.114 0.422 MesoH : -0.723 0.310 -0.391 0.177 MuHd_075 : 10.258 7.580 3.073 3.356 MuHd_095 : 32.689 20.275 5.671 7.483 MuHd_100 : 29.027 17.534 5.114 6.686 MuHd_105 : 21.435 11.449 4.272 4.533 Hmax_075 : 7.817 7.700 -0.590 3.815 Hmax_095 : 13.400 12.800 0.472 4.860 Hmax_100 : 13.400 12.800 0.472 4.860 Hmax_105 : 4.800 5.600 -0.918 2.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6963 0.3037 DFMC : 0.8568 0.1432
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 252 cgd3_2170 MSRLSQSLHDRHITIFSPEGKLYQIEYTFRAVKNSNITAIAIKGKDTVCIVCEKKVPNQQGQQDKLLDPAYVTSLYKVRK 80 HIGAVMLGLAPDCRSIISKCREIAGKFAFEKGVEIPVSYLSHKIADVNQLYTQHASMRLLGASGMFISIDDEDGPSLYKI 160 DPAGYFASYRACAVGTKEREGNNALEKIIKNEPLNSCEEVISASIDCLKTLLGVDFKAEDIEVGVVTKDMPEFRLLSVEE 240 IDNYLTNIAERD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd3_2170 3 ----MSR|LS 0.073 . cgd3_2170 11 SQSLHDR|HI 0.117 . cgd3_2170 21 IFSPEGK|LY 0.066 . cgd3_2170 30 QIEYTFR|AV 0.119 . cgd3_2170 33 YTFRAVK|NS 0.087 . cgd3_2170 43 ITAIAIK|GK 0.069 . cgd3_2170 45 AIAIKGK|DT 0.085 . cgd3_2170 54 VCIVCEK|KV 0.072 . cgd3_2170 55 CIVCEKK|VP 0.090 . cgd3_2170 65 QQGQQDK|LL 0.083 . cgd3_2170 77 YVTSLYK|VR 0.056 . cgd3_2170 79 TSLYKVR|KH 0.095 . cgd3_2170 80 SLYKVRK|HI 0.172 . cgd3_2170 94 GLAPDCR|SI 0.140 . cgd3_2170 99 CRSIISK|CR 0.088 . cgd3_2170 101 SIISKCR|EI 0.107 . cgd3_2170 106 CREIAGK|FA 0.092 . cgd3_2170 111 GKFAFEK|GV 0.089 . cgd3_2170 123 VSYLSHK|IA 0.077 . cgd3_2170 138 TQHASMR|LL 0.177 . cgd3_2170 159 DGPSLYK|ID 0.055 . cgd3_2170 170 GYFASYR|AC 0.093 . cgd3_2170 177 ACAVGTK|ER 0.059 . cgd3_2170 179 AVGTKER|EG 0.085 . cgd3_2170 187 GNNALEK|II 0.070 . cgd3_2170 190 ALEKIIK|NE 0.053 . cgd3_2170 209 ASIDCLK|TL 0.060 . cgd3_2170 217 LLGVDFK|AE 0.067 . cgd3_2170 228 EVGVVTK|DM 0.064 . cgd3_2170 234 KDMPEFR|LL 0.119 . cgd3_2170 251 LTNIAER|D- 0.117 . ____________________________^_________________

  • Fasta :-

    >cgd3_2170 ATGTCCAGATTATCTCAATCCCTGCATGATAGGCATATTACAATCTTTTCGCCAGAAGGC AAACTTTATCAAATAGAATATACCTTTAGAGCTGTGAAGAATTCAAACATTACGGCAATT GCTATAAAGGGTAAAGATACCGTATGCATTGTATGTGAAAAGAAAGTCCCAAATCAGCAA GGACAACAAGATAAACTTTTGGACCCTGCCTATGTTACGTCTTTGTACAAAGTAAGAAAG CATATTGGGGCAGTAATGCTTGGGTTGGCTCCTGATTGTAGATCAATTATCTCAAAGTGT AGGGAAATTGCAGGGAAATTTGCCTTCGAAAAAGGAGTTGAAATTCCTGTTTCATACCTA TCACATAAAATAGCAGATGTGAATCAACTATATACTCAGCATGCATCTATGAGACTTTTG GGTGCTTCTGGGATGTTTATATCAATAGATGATGAAGATGGGCCTTCATTATACAAGATT GACCCAGCTGGGTACTTTGCCTCCTACAGAGCATGTGCTGTTGGTACAAAAGAGAGAGAG GGGAATAATGCGCTTGAGAAGATTATCAAGAACGAGCCTCTAAACAGCTGCGAAGAAGTT ATTTCTGCAAGTATCGACTGTCTGAAAACCCTACTTGGAGTAGATTTCAAAGCTGAAGAC ATAGAGGTTGGTGTTGTTACAAAAGATATGCCCGAATTTAGACTATTAAGCGTTGAAGAA ATTGATAATTACCTAACTAATATCGCTGAAAGGGATTAG
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  • Fasta :-

    MSRLSQSLHDRHITIFSPEGKLYQIEYTFRAVKNSNITAIAIKGKDTVCIVCEKKVPNQQ GQQDKLLDPAYVTSLYKVRKHIGAVMLGLAPDCRSIISKCREIAGKFAFEKGVEIPVSYL SHKIADVNQLYTQHASMRLLGASGMFISIDDEDGPSLYKIDPAGYFASYRACAVGTKERE GNNALEKIIKNEPLNSCEEVISASIDCLKTLLGVDFKAEDIEVGVVTKDMPEFRLLSVEE IDNYLTNIAERD

  • title: active site
  • coordinates: I37,E53,K55,S74,T176
No Results
No Results
IDSitePeptideScoreMethod
cgd3_2170237 SFRLLSVEEI0.997unsp

cgd3_2170      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India