cgd3_2200 | Proteasome subunit alpha type

UniProt_ID: Q5CUM6

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	cgd3_2200	OTHER	0.999892	0.000100	0.000008

No Results

Fasta :-
>cgd3_2200 MTSVGSGYDSSVSTFSPDGRVFQVEYANKAVDNSGTTIAMIYNSGIVFAVDKYVASKMMV AGTNRRVFAIDNQIGCCVAGFVTDSNKIVSIARSESLNYQKIYGNPIPIRVLAERIAMYM HNFTLYGSVRPFGCSILLGGLDQDRGVELYCIHPSGSCYKYCAMAVGKGRQFARTDLEKL MEKNLSEEDALYEAARVIIQSREEGASKNLELEMAFIGPGSDFQFSIVPEKQINLLNERV EKYIDDLASAE
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd3_2200.fa Sequence name : cgd3_2200 Sequence length : 251 VALUES OF COMPUTED PARAMETERS Coef20 : 3.707 CoefTot : -0.433 ChDiff : -5 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.465 1.400 0.190 0.556 MesoH : -0.451 0.450 -0.262 0.211 MuHd_075 : 21.947 6.208 4.180 1.764 MuHd_095 : 12.438 15.736 3.824 4.478 MuHd_100 : 7.640 13.916 2.164 4.262 MuHd_105 : 4.555 9.037 0.791 3.382 Hmax_075 : 12.250 2.333 0.469 2.228 Hmax_095 : 13.200 10.600 1.660 4.600 Hmax_100 : 13.200 10.600 1.660 4.600 Hmax_105 : 6.767 3.000 0.127 2.730 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9406 0.0594 DFMC : 0.9167 0.0833

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 251 cgd3_2200 MTSVGSGYDSSVSTFSPDGRVFQVEYANKAVDNSGTTIAMIYNSGIVFAVDKYVASKMMVAGTNRRVFAIDNQIGCCVAG 80 FVTDSNKIVSIARSESLNYQKIYGNPIPIRVLAERIAMYMHNFTLYGSVRPFGCSILLGGLDQDRGVELYCIHPSGSCYK 160 YCAMAVGKGRQFARTDLEKLMEKNLSEEDALYEAARVIIQSREEGASKNLELEMAFIGPGSDFQFSIVPEKQINLLNERV 240 EKYIDDLASAE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd3_2200 20 TFSPDGR|VF 0.093 . cgd3_2200 29 QVEYANK|AV 0.091 . cgd3_2200 52 IVFAVDK|YV 0.081 . cgd3_2200 57 DKYVASK|MM 0.065 . cgd3_2200 65 MVAGTNR|RV 0.133 . cgd3_2200 66 VAGTNRR|VF 0.089 . cgd3_2200 87 FVTDSNK|IV 0.080 . cgd3_2200 93 KIVSIAR|SE 0.104 . cgd3_2200 101 ESLNYQK|IY 0.064 . cgd3_2200 110 GNPIPIR|VL 0.091 . cgd3_2200 115 IRVLAER|IA 0.107 . cgd3_2200 130 TLYGSVR|PF 0.115 . cgd3_2200 145 GGLDQDR|GV 0.109 . cgd3_2200 160 PSGSCYK|YC 0.073 . cgd3_2200 168 CAMAVGK|GR 0.068 . cgd3_2200 170 MAVGKGR|QF 0.085 . cgd3_2200 174 KGRQFAR|TD 0.112 . cgd3_2200 179 ARTDLEK|LM 0.068 . cgd3_2200 183 LEKLMEK|NL 0.061 . cgd3_2200 196 ALYEAAR|VI 0.116 . cgd3_2200 202 RVIIQSR|EE 0.100 . cgd3_2200 208 REEGASK|NL 0.063 . cgd3_2200 231 FSIVPEK|QI 0.063 . cgd3_2200 239 INLLNER|VE 0.062 . cgd3_2200 242 LNERVEK|YI 0.189 . ____________________________^_________________

Fasta :-
>cgd3_2200 ATGACTAGTGTAGGATCTGGATATGACTCATCAGTTTCTACCTTTTCTCCTGATGGTCGT GTCTTCCAAGTCGAATATGCAAACAAAGCTGTTGACAATAGTGGAACAACTATTGCAATG ATTTACAACTCTGGTATTGTTTTTGCTGTAGACAAATATGTTGCTAGCAAAATGATGGTA GCAGGTACTAACAGAAGAGTTTTTGCGATAGATAATCAGATTGGTTGTTGTGTTGCTGGA TTTGTTACGGATTCGAACAAGATCGTTTCAATAGCACGTTCAGAGTCGTTAAATTATCAA AAAATCTATGGGAATCCTATACCAATACGCGTGTTAGCAGAGAGAATTGCAATGTATATG CATAACTTTACTCTTTATGGTTCCGTTCGACCGTTCGGTTGTTCAATACTCCTGGGGGGG CTTGACCAGGATAGAGGTGTTGAGCTATATTGTATTCATCCATCCGGCTCATGCTATAAA TACTGCGCAATGGCGGTTGGTAAAGGTAGACAGTTTGCAAGAACTGACCTAGAAAAACTA ATGGAGAAAAATTTATCCGAGGAAGACGCGTTATACGAGGCTGCAAGAGTGATAATACAA TCTAGAGAGGAAGGAGCATCAAAAAACCTTGAACTAGAAATGGCTTTCATTGGCCCTGGA TCGGATTTCCAATTTTCTATAGTTCCTGAAAAACAAATAAATTTGCTCAACGAGCGTGTC GAGAAATACATAGATGACCTTGCAAGCGCCGAGTAG
Download Fasta

Fasta :-

MTSVGSGYDSSVSTFSPDGRVFQVEYANKAVDNSGTTIAMIYNSGIVFAVDKYVASKMMV AGTNRRVFAIDNQIGCCVAGFVTDSNKIVSIARSESLNYQKIYGNPIPIRVLAERIAMYM HNFTLYGSVRPFGCSILLGGLDQDRGVELYCIHPSGSCYKYCAMAVGKGRQFARTDLEKL MEKNLSEEDALYEAARVIIQSREEGASKNLELEMAFIGPGSDFQFSIVPEKQINLLNERV EKYIDDLASAE

Proteasome subunits

title: active site
coordinates: G35,D51,Y53,R66,K168

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	cgd3_2200	T	2	0.668	0.170	cgd3_2200	S	3	0.550	0.073	cgd3_2200	S	6	0.512	0.020

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	cgd3_2200	T	2	0.668	0.170	cgd3_2200	S	3	0.550	0.073	cgd3_2200	S	6	0.512	0.020

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	cgd3_2200	201 S	VIIQSREEG	0.99	unsp	cgd3_2200	201 S	VIIQSREEG	0.99	unsp	cgd3_2200	201 S	VIIQSREEG	0.99	unsp	cgd3_2200	6 S	TSVGSGYDS	0.996	unsp	cgd3_2200	186 S	EKNLSEEDA	0.998	unsp

cgd3_2200 | Proteasome subunit alpha type

ID's

UniProt_ID: Q5CUM6

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

cgd3_2200

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India