_IDPredictionOTHERSPmTPCS_Position
cgd3_2200OTHER0.9998920.0001000.000008
No Results
  • Fasta :-

    >cgd3_2200 MTSVGSGYDSSVSTFSPDGRVFQVEYANKAVDNSGTTIAMIYNSGIVFAVDKYVASKMMV AGTNRRVFAIDNQIGCCVAGFVTDSNKIVSIARSESLNYQKIYGNPIPIRVLAERIAMYM HNFTLYGSVRPFGCSILLGGLDQDRGVELYCIHPSGSCYKYCAMAVGKGRQFARTDLEKL MEKNLSEEDALYEAARVIIQSREEGASKNLELEMAFIGPGSDFQFSIVPEKQINLLNERV EKYIDDLASAE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd3_2200.fa Sequence name : cgd3_2200 Sequence length : 251 VALUES OF COMPUTED PARAMETERS Coef20 : 3.707 CoefTot : -0.433 ChDiff : -5 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.465 1.400 0.190 0.556 MesoH : -0.451 0.450 -0.262 0.211 MuHd_075 : 21.947 6.208 4.180 1.764 MuHd_095 : 12.438 15.736 3.824 4.478 MuHd_100 : 7.640 13.916 2.164 4.262 MuHd_105 : 4.555 9.037 0.791 3.382 Hmax_075 : 12.250 2.333 0.469 2.228 Hmax_095 : 13.200 10.600 1.660 4.600 Hmax_100 : 13.200 10.600 1.660 4.600 Hmax_105 : 6.767 3.000 0.127 2.730 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9406 0.0594 DFMC : 0.9167 0.0833
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 251 cgd3_2200 MTSVGSGYDSSVSTFSPDGRVFQVEYANKAVDNSGTTIAMIYNSGIVFAVDKYVASKMMVAGTNRRVFAIDNQIGCCVAG 80 FVTDSNKIVSIARSESLNYQKIYGNPIPIRVLAERIAMYMHNFTLYGSVRPFGCSILLGGLDQDRGVELYCIHPSGSCYK 160 YCAMAVGKGRQFARTDLEKLMEKNLSEEDALYEAARVIIQSREEGASKNLELEMAFIGPGSDFQFSIVPEKQINLLNERV 240 EKYIDDLASAE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd3_2200 20 TFSPDGR|VF 0.093 . cgd3_2200 29 QVEYANK|AV 0.091 . cgd3_2200 52 IVFAVDK|YV 0.081 . cgd3_2200 57 DKYVASK|MM 0.065 . cgd3_2200 65 MVAGTNR|RV 0.133 . cgd3_2200 66 VAGTNRR|VF 0.089 . cgd3_2200 87 FVTDSNK|IV 0.080 . cgd3_2200 93 KIVSIAR|SE 0.104 . cgd3_2200 101 ESLNYQK|IY 0.064 . cgd3_2200 110 GNPIPIR|VL 0.091 . cgd3_2200 115 IRVLAER|IA 0.107 . cgd3_2200 130 TLYGSVR|PF 0.115 . cgd3_2200 145 GGLDQDR|GV 0.109 . cgd3_2200 160 PSGSCYK|YC 0.073 . cgd3_2200 168 CAMAVGK|GR 0.068 . cgd3_2200 170 MAVGKGR|QF 0.085 . cgd3_2200 174 KGRQFAR|TD 0.112 . cgd3_2200 179 ARTDLEK|LM 0.068 . cgd3_2200 183 LEKLMEK|NL 0.061 . cgd3_2200 196 ALYEAAR|VI 0.116 . cgd3_2200 202 RVIIQSR|EE 0.100 . cgd3_2200 208 REEGASK|NL 0.063 . cgd3_2200 231 FSIVPEK|QI 0.063 . cgd3_2200 239 INLLNER|VE 0.062 . cgd3_2200 242 LNERVEK|YI 0.189 . ____________________________^_________________
  • Fasta :-

    >cgd3_2200 ATGACTAGTGTAGGATCTGGATATGACTCATCAGTTTCTACCTTTTCTCCTGATGGTCGT GTCTTCCAAGTCGAATATGCAAACAAAGCTGTTGACAATAGTGGAACAACTATTGCAATG ATTTACAACTCTGGTATTGTTTTTGCTGTAGACAAATATGTTGCTAGCAAAATGATGGTA GCAGGTACTAACAGAAGAGTTTTTGCGATAGATAATCAGATTGGTTGTTGTGTTGCTGGA TTTGTTACGGATTCGAACAAGATCGTTTCAATAGCACGTTCAGAGTCGTTAAATTATCAA AAAATCTATGGGAATCCTATACCAATACGCGTGTTAGCAGAGAGAATTGCAATGTATATG CATAACTTTACTCTTTATGGTTCCGTTCGACCGTTCGGTTGTTCAATACTCCTGGGGGGG CTTGACCAGGATAGAGGTGTTGAGCTATATTGTATTCATCCATCCGGCTCATGCTATAAA TACTGCGCAATGGCGGTTGGTAAAGGTAGACAGTTTGCAAGAACTGACCTAGAAAAACTA ATGGAGAAAAATTTATCCGAGGAAGACGCGTTATACGAGGCTGCAAGAGTGATAATACAA TCTAGAGAGGAAGGAGCATCAAAAAACCTTGAACTAGAAATGGCTTTCATTGGCCCTGGA TCGGATTTCCAATTTTCTATAGTTCCTGAAAAACAAATAAATTTGCTCAACGAGCGTGTC GAGAAATACATAGATGACCTTGCAAGCGCCGAGTAG
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  • Fasta :-

    MTSVGSGYDSSVSTFSPDGRVFQVEYANKAVDNSGTTIAMIYNSGIVFAVDKYVASKMMV AGTNRRVFAIDNQIGCCVAGFVTDSNKIVSIARSESLNYQKIYGNPIPIRVLAERIAMYM HNFTLYGSVRPFGCSILLGGLDQDRGVELYCIHPSGSCYKYCAMAVGKGRQFARTDLEKL MEKNLSEEDALYEAARVIIQSREEGASKNLELEMAFIGPGSDFQFSIVPEKQINLLNERV EKYIDDLASAE

  • title: active site
  • coordinates: G35,D51,Y53,R66,K168
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
cgd3_2200T20.6680.170cgd3_2200S30.5500.073cgd3_2200S60.5120.020
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
cgd3_2200T20.6680.170cgd3_2200S30.5500.073cgd3_2200S60.5120.020
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd3_2200201 SVIIQSREEG0.99unspcgd3_2200201 SVIIQSREEG0.99unspcgd3_2200201 SVIIQSREEG0.99unspcgd3_22006 STSVGSGYDS0.996unspcgd3_2200186 SEKNLSEEDA0.998unsp

cgd3_2200      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India