cgd3_2530 | Proteasome subunit beta type

_IDPredictionOTHERSPmTPCS_Position
cgd3_2530OTHER0.9995770.0002170.000206
No Results

  • Fasta :-

    >cgd3_2530 MNAYLNAYFSEKSTNGFLFENNIATAPCLSDSTELKTVKTGTTIVGVACNDCVVLGADTR ATNGPIVADKDCEKIHRLSDNIFAAGAGTAADLDHVTSLIEGNLELQKLQMNRKPRVAHA VSMLSDHLYKYQGYIGAHLIVAGSDSTGNFVFQVSANGCIMQLPFTSMGSGSLCARSILE ARYRDGLTESECVELVSDAIRAGIYNDLYSGSNVNILIIKNNYVKHFRHFDTKASERIYR QPKPISFPVGTTPIIAEKTEDLSSFVVEVSEVQIDENMD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd3_2530.fa Sequence name : cgd3_2530 Sequence length : 279 VALUES OF COMPUTED PARAMETERS Coef20 : 3.682 CoefTot : -0.066 ChDiff : -9 ZoneTo : 10 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.500 1.418 0.273 0.493 MesoH : -0.123 0.376 -0.225 0.228 MuHd_075 : 23.944 13.864 7.707 4.203 MuHd_095 : 16.117 7.759 2.979 2.174 MuHd_100 : 11.895 4.587 3.334 1.006 MuHd_105 : 15.990 6.915 5.237 2.293 Hmax_075 : 12.133 8.867 1.266 4.460 Hmax_095 : 4.987 4.287 -1.512 2.800 Hmax_100 : 6.700 5.200 -0.606 2.570 Hmax_105 : 10.850 4.800 0.747 3.030 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9377 0.0623 DFMC : 0.8955 0.1045
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 279 cgd3_2530 MNAYLNAYFSEKSTNGFLFENNIATAPCLSDSTELKTVKTGTTIVGVACNDCVVLGADTRATNGPIVADKDCEKIHRLSD 80 NIFAAGAGTAADLDHVTSLIEGNLELQKLQMNRKPRVAHAVSMLSDHLYKYQGYIGAHLIVAGSDSTGNFVFQVSANGCI 160 MQLPFTSMGSGSLCARSILEARYRDGLTESECVELVSDAIRAGIYNDLYSGSNVNILIIKNNYVKHFRHFDTKASERIYR 240 QPKPISFPVGTTPIIAEKTEDLSSFVVEVSEVQIDENMD 320 ................................................................................ 80 ...................................P............................................ 160 ................................................................................ 240 ....................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ cgd3_2530 12 NAYFSEK|ST 0.089 . cgd3_2530 36 SDSTELK|TV 0.100 . cgd3_2530 39 TELKTVK|TG 0.063 . cgd3_2530 60 VLGADTR|AT 0.080 . cgd3_2530 70 GPIVADK|DC 0.097 . cgd3_2530 74 ADKDCEK|IH 0.057 . cgd3_2530 77 DCEKIHR|LS 0.086 . cgd3_2530 108 GNLELQK|LQ 0.054 . cgd3_2530 113 QKLQMNR|KP 0.077 . cgd3_2530 114 KLQMNRK|PR 0.077 . cgd3_2530 116 QMNRKPR|VA 0.525 *ProP* cgd3_2530 130 LSDHLYK|YQ 0.090 . cgd3_2530 176 SGSLCAR|SI 0.161 . cgd3_2530 182 RSILEAR|YR 0.103 . cgd3_2530 184 ILEARYR|DG 0.093 . cgd3_2530 201 LVSDAIR|AG 0.086 . cgd3_2530 220 VNILIIK|NN 0.059 . cgd3_2530 225 IKNNYVK|HF 0.065 . cgd3_2530 228 NYVKHFR|HF 0.106 . cgd3_2530 233 FRHFDTK|AS 0.088 . cgd3_2530 237 DTKASER|IY 0.086 . cgd3_2530 240 ASERIYR|QP 0.223 . cgd3_2530 243 RIYRQPK|PI 0.169 . cgd3_2530 258 TPIIAEK|TE 0.059 . ____________________________^_________________

  • Fasta :-

    >cgd3_2530 ATGAATGCCTACTTAAATGCTTATTTTTCTGAAAAATCAACAAATGGGTTCTTATTCGAA AATAATATTGCAACTGCTCCCTGCCTATCTGACTCAACTGAGCTTAAAACAGTTAAAACT GGTACTACGATTGTAGGAGTTGCTTGCAACGATTGTGTTGTTCTTGGTGCAGATACTAGA GCAACGAATGGTCCTATTGTTGCAGATAAAGATTGCGAAAAGATACACCGACTTTCAGAT AACATTTTTGCTGCTGGGGCAGGAACTGCTGCTGACCTTGATCATGTAACTTCTCTTATT GAGGGGAATTTAGAATTGCAGAAACTTCAAATGAATCGAAAACCCAGAGTAGCGCATGCG GTTTCTATGCTTAGCGACCACTTATATAAATACCAAGGCTATATTGGTGCCCATTTGATA GTTGCAGGCTCCGATTCTACAGGAAATTTTGTATTCCAAGTTTCAGCAAATGGTTGTATC ATGCAGTTGCCGTTTACATCTATGGGGAGTGGTTCTCTATGCGCAAGGTCGATATTAGAA GCAAGGTATAGGGATGGTCTAACAGAGAGTGAATGTGTAGAATTAGTTTCAGATGCGATT AGGGCAGGGATTTATAATGATCTCTATAGTGGAAGTAACGTAAATATTCTTATTATCAAA AACAATTATGTTAAACATTTCAGACATTTTGATACTAAGGCCAGTGAAAGAATCTACCGA CAGCCAAAGCCCATTTCATTTCCCGTTGGTACAACTCCAATTATTGCAGAAAAGACGGAA GATTTGAGCTCATTTGTTGTGGAGGTATCTGAAGTACAAATCGATGAAAATATGGATTAA
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  • Fasta :-

    MNAYLNAYFSEKSTNGFLFENNIATAPCLSDSTELKTVKTGTTIVGVACNDCVVLGADTR ATNGPIVADKDCEKIHRLSDNIFAAGAGTAADLDHVTSLIEGNLELQKLQMNRKPRVAHA VSMLSDHLYKYQGYIGAHLIVAGSDSTGNFVFQVSANGCIMQLPFTSMGSGSLCARSILE ARYRDGLTESECVELVSDAIRAGIYNDLYSGSNVNILIIKNNYVKHFRHFDTKASERIYR QPKPISFPVGTTPIIAEKTEDLSSFVVEVSEVQIDENMD

  • title: active site
  • coordinates: T42,D58,R60,K74,S170,D207,S210,G211
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
cgd3_2530T2590.5160.077cgd3_2530T2520.5150.498
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
cgd3_2530T2590.5160.077cgd3_2530T2520.5150.498
No Results

cgd3_2530      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India