cgd4_210 | Ubiquitin-conjugating enzyme E2

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd4_210OTHER0.9996830.0000990.000218
No Results

  • Fasta :-

    >cgd4_210 MGDNKRMTLELRGLQVFTDELEEDKQVGIKLIGNRNDNFLGIIRGPIGTPYEGGIFQLDI IVPKEYPYEPPKVKFITRIWHPNISSQTGAICLDILKDAWSPALTLRTVMLSIQALLSSP EPNDPQDALVASLYKSDYQEYIETAKSWTQMYAKPTSKEERIKRFLDMGFNRESIITALE RNNWDENLALNELLFEN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd4_210.fa Sequence name : cgd4_210 Sequence length : 197 VALUES OF COMPUTED PARAMETERS Coef20 : 3.615 CoefTot : -0.250 ChDiff : -7 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.829 1.259 0.023 0.494 MesoH : -0.516 0.271 -0.368 0.232 MuHd_075 : 11.538 4.679 3.723 1.919 MuHd_095 : 3.207 4.507 1.225 1.688 MuHd_100 : 8.859 2.860 1.001 2.279 MuHd_105 : 21.348 7.965 2.870 4.368 Hmax_075 : 4.900 4.550 -0.873 2.100 Hmax_095 : -5.600 3.063 -2.871 0.936 Hmax_100 : 3.100 4.600 -2.586 2.350 Hmax_105 : 12.500 10.000 -0.126 3.850 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9771 0.0229 DFMC : 0.9734 0.0266
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 197 cgd4_210 MGDNKRMTLELRGLQVFTDELEEDKQVGIKLIGNRNDNFLGIIRGPIGTPYEGGIFQLDIIVPKEYPYEPPKVKFITRIW 80 HPNISSQTGAICLDILKDAWSPALTLRTVMLSIQALLSSPEPNDPQDALVASLYKSDYQEYIETAKSWTQMYAKPTSKEE 160 RIKRFLDMGFNRESIITALERNNWDENLALNELLFEN 240 ................................................................................ 80 ................................................................................ 160 ...P................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ cgd4_210 5 --MGDNK|RM 0.058 . cgd4_210 6 -MGDNKR|MT 0.147 . cgd4_210 12 RMTLELR|GL 0.082 . cgd4_210 25 DELEEDK|QV 0.077 . cgd4_210 30 DKQVGIK|LI 0.071 . cgd4_210 35 IKLIGNR|ND 0.072 . cgd4_210 44 NFLGIIR|GP 0.069 . cgd4_210 64 LDIIVPK|EY 0.064 . cgd4_210 72 YPYEPPK|VK 0.063 . cgd4_210 74 YEPPKVK|FI 0.073 . cgd4_210 78 KVKFITR|IW 0.124 . cgd4_210 97 ICLDILK|DA 0.059 . cgd4_210 107 SPALTLR|TV 0.153 . cgd4_210 135 LVASLYK|SD 0.076 . cgd4_210 146 EYIETAK|SW 0.082 . cgd4_210 154 WTQMYAK|PT 0.088 . cgd4_210 158 YAKPTSK|EE 0.058 . cgd4_210 161 PTSKEER|IK 0.102 . cgd4_210 163 SKEERIK|RF 0.068 . cgd4_210 164 KEERIKR|FL 0.768 *ProP* cgd4_210 172 LDMGFNR|ES 0.083 . cgd4_210 181 IITALER|NN 0.083 . ____________________________^_________________

  • Fasta :-

    >cgd4_210 ATAAAATATTGAAGGGATTAGCACGTATTGTGGAAACAAATTTGTAAATTAAAAAAAAAC TCTAAATTCGTGCATAGAGGGGAGATTTTGAATAAACAAAAAAAAAAATAATTATTATAA AAAAGATATAATATTCTGTAATCACCAAGTAAAAGGTCGTATATAATCATATTCATAATA TTTATGATTTAATATACCAAGAAAATATAATTCCACAAAATATTTATTAAGAATTTATTT TTAGATTAATTCAAATTATTAATATTATTTTCAACTAAATTAAACAAAAAAAAAAAAAAA TAATTATCAATATTACAGGTAAAATGGGAGATAACAAAAGAATGACTCTGGAACTCAGAG GCCTCCAAGTATTTACAGACGAGCTTGAAGAAGATAAGCAGGTTGGAATAAAGCTGATTG GTAATAGAAACGACAACTTTTTGGGTATTATTAGAGGGCCTATAGGAACACCATATGAAG GTGGTATATTCCAACTTGATATTATTGTACCAAAAGAATATCCATACGAGCCTCCAAAAG TTAAATTCATCACAAGAATTTGGCATCCGAATATTTCTAGTCAAACAGGAGCTATTTGCT TGGATATTTTAAAAGATGCCTGGAGCCCTGCTTTAACTCTTAGAACAGTAATGCTTTCTA TACAAGCATTACTCTCTTCTCCTGAACCAAATGATCCTCAAGATGCATTGGTCGCATCTC TATACAAAAGTGATTACCAAGAATATATTGAAACGGCCAAAAGTTGGACACAAATGTATG CAAAGCCAACATCAAAGGAAGAAAGGATTAAGAGATTTCTTGATATGGGATTCAACCGTG AATCTATAATAACAGCACTAGAAAGAAATAATTGGGATGAAAATCTCGCTCTAAATGAGC TATTATTTGAAAACTAACTTTTTTAACGTATTTTACCTAACTTTACGTTAATATTCTTAA TTACAATTCAGTGTTTTTAAATACCTAAATCAGCTATCAATTACTAAATTATTGCCCACC GAATGCCTTAATATAATTACATCTTCCATATTAAATTTTATTTGTTTAGTTCTCTTTCTC ATATTTTCCACCTCCCCACATTAAGCATGTATAGCCCATGCATCAATACAAGGCGCGCGC GCCAAAGCAGTGTCTTGTGTGATTTTACATGTCAAATTATTGCAATGTTAGTGGTTAAAT AAAA
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  • Fasta :-

    MGDNKRMTLELRGLQVFTDELEEDKQVGIKLIGNRNDNFLGIIRGPIGTPYEGGIFQLDI IVPKEYPYEPPKVKFITRIWHPNISSQTGAICLDILKDAWSPALTLRTVMLSIQALLSSP EPNDPQDALVASLYKSDYQEYIETAKSWTQMYAKPTSKEERIKRFLDMGFNRESIITALE RNNWDENLALNELLFEN

  • title: active site cysteine
  • coordinates: C92
No Results
No Results
IDSitePeptideScoreMethod
cgd4_210157 SAKPTSKEER0.995unsp

cgd4_210      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India