cgd4_2540 | ClpA/B family/26S proteasome subunit P45

_IDPredictionOTHERSPmTPCS_Position
cgd4_2540OTHER0.9998820.0000170.000101
No Results

  • Fasta :-

    >cgd4_2540 MACSLAKSQTIMSGNIDREKYLYGSLKELEKELNFLSIQEDYIKDEQKGLKREFQRAKEE IKRIQSVPLVIGQFLEMIDSRYGIVSSTAGSNYYVRVLSTINREDLKPPASVALHRHSHA IVDILPPEADSSIQMLQMQEKPDVTYSDIGGMDIQKQEVREAVELPLVCPELYQQIGIDP PTGVLLYGPPGTGKTMLAKAVANHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENS PAIVFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD PALLRPGRLDRKIEFPLPDRRQRRLIFQTITAKMNLSEEVDLEEYVSRPEKISAADIAAI SQEAGMQAVRKNRYVILPKDFEKGWKIHVKKSDRDFDFYSV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd4_2540.fa Sequence name : cgd4_2540 Sequence length : 401 VALUES OF COMPUTED PARAMETERS Coef20 : 4.107 CoefTot : 0.088 ChDiff : -4 ZoneTo : 16 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.806 0.976 -0.006 0.456 MesoH : -0.528 0.219 -0.359 0.215 MuHd_075 : 22.488 18.647 3.920 6.817 MuHd_095 : 23.315 10.884 3.322 4.660 MuHd_100 : 25.612 13.616 4.393 5.425 MuHd_105 : 20.494 12.053 4.911 4.245 Hmax_075 : 8.517 9.100 -0.086 3.418 Hmax_095 : 9.800 7.700 -0.012 2.940 Hmax_100 : 10.800 9.600 0.331 3.370 Hmax_105 : 9.800 12.017 1.608 4.118 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5166 0.4834 DFMC : 0.5658 0.4342
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 401 cgd4_2540 MACSLAKSQTIMSGNIDREKYLYGSLKELEKELNFLSIQEDYIKDEQKGLKREFQRAKEEIKRIQSVPLVIGQFLEMIDS 80 RYGIVSSTAGSNYYVRVLSTINREDLKPPASVALHRHSHAIVDILPPEADSSIQMLQMQEKPDVTYSDIGGMDIQKQEVR 160 EAVELPLVCPELYQQIGIDPPTGVLLYGPPGTGKTMLAKAVANHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENS 240 PAIVFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 320 RQRRLIFQTITAKMNLSEEVDLEEYVSRPEKISAADIAAISQEAGMQAVRKNRYVILPKDFEKGWKIHVKKSDRDFDFYS 400 V 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ...P............................................................................ 400 . 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ cgd4_2540 7 MACSLAK|SQ 0.076 . cgd4_2540 18 MSGNIDR|EK 0.085 . cgd4_2540 20 GNIDREK|YL 0.076 . cgd4_2540 27 YLYGSLK|EL 0.080 . cgd4_2540 31 SLKELEK|EL 0.058 . cgd4_2540 44 IQEDYIK|DE 0.071 . cgd4_2540 48 YIKDEQK|GL 0.069 . cgd4_2540 51 DEQKGLK|RE 0.057 . cgd4_2540 52 EQKGLKR|EF 0.125 . cgd4_2540 56 LKREFQR|AK 0.132 . cgd4_2540 58 REFQRAK|EE 0.068 . cgd4_2540 62 RAKEEIK|RI 0.063 . cgd4_2540 63 AKEEIKR|IQ 0.147 . cgd4_2540 81 LEMIDSR|YG 0.084 . cgd4_2540 96 GSNYYVR|VL 0.118 . cgd4_2540 103 VLSTINR|ED 0.080 . cgd4_2540 107 INREDLK|PP 0.060 . cgd4_2540 116 ASVALHR|HS 0.126 . cgd4_2540 141 MLQMQEK|PD 0.064 . cgd4_2540 156 GGMDIQK|QE 0.057 . cgd4_2540 160 IQKQEVR|EA 0.082 . cgd4_2540 194 GPPGTGK|TM 0.058 . cgd4_2540 199 GKTMLAK|AV 0.084 . cgd4_2540 211 TTATFIR|VV 0.203 . cgd4_2540 220 GSEFVQK|YL 0.120 . cgd4_2540 227 YLGEGPR|MV 0.154 . cgd4_2540 230 EGPRMVR|DV 0.294 . cgd4_2540 234 MVRDVFR|LA 0.117 . cgd4_2540 237 DVFRLAR|EN 0.269 . cgd4_2540 255 VDSIATK|RF 0.069 . cgd4_2540 256 DSIATKR|FD 0.204 . cgd4_2540 265 AQTGADR|EV 0.095 . cgd4_2540 269 ADREVQR|IL 0.115 . cgd4_2540 288 DQTTNVK|VI 0.057 . cgd4_2540 295 VIMATNR|AD 0.076 . cgd4_2540 305 LDPALLR|PG 0.069 . cgd4_2540 308 ALLRPGR|LD 0.217 . cgd4_2540 311 RPGRLDR|KI 0.309 . cgd4_2540 312 PGRLDRK|IE 0.069 . cgd4_2540 320 EFPLPDR|RQ 0.064 . cgd4_2540 321 FPLPDRR|QR 0.104 . cgd4_2540 323 LPDRRQR|RL 0.251 . cgd4_2540 324 PDRRQRR|LI 0.591 *ProP* cgd4_2540 333 FQTITAK|MN 0.062 . cgd4_2540 348 LEEYVSR|PE 0.083 . cgd4_2540 351 YVSRPEK|IS 0.135 . cgd4_2540 370 AGMQAVR|KN 0.073 . cgd4_2540 371 GMQAVRK|NR 0.093 . cgd4_2540 373 QAVRKNR|YV 0.339 . cgd4_2540 379 RYVILPK|DF 0.083 . cgd4_2540 383 LPKDFEK|GW 0.073 . cgd4_2540 386 DFEKGWK|IH 0.053 . cgd4_2540 390 GWKIHVK|KS 0.078 . cgd4_2540 391 WKIHVKK|SD 0.184 . cgd4_2540 394 HVKKSDR|DF 0.108 . ____________________________^_________________

  • Fasta :-

    >cgd4_2540 ATGGCATGTTCTCTGGCCAAGTCGCAAACAATTATGTCTGGCAATATAGACCGTGAAAAA TATCTCTATGGAAGCCTTAAGGAGCTTGAGAAAGAACTCAACTTTTTGAGTATTCAAGAA GATTATATCAAAGATGAACAAAAAGGTTTGAAACGTGAATTCCAGCGTGCGAAGGAGGAA ATCAAACGTATTCAATCAGTTCCGCTCGTTATTGGGCAATTTCTTGAAATGATAGATTCC AGGTACGGAATTGTTTCTTCTACAGCAGGCTCAAATTATTATGTTAGGGTTCTTAGTACA ATCAATAGAGAAGATCTTAAACCACCTGCGTCAGTCGCGCTTCATAGGCACAGTCATGCA ATAGTTGATATTCTTCCTCCTGAAGCAGATTCTAGTATTCAAATGCTTCAAATGCAGGAA AAACCTGATGTAACATATTCTGATATTGGAGGGATGGATATTCAAAAGCAAGAAGTACGA GAAGCCGTTGAGTTGCCACTTGTGTGTCCAGAATTATATCAACAAATAGGAATTGATCCT CCAACTGGAGTGCTTCTATATGGACCTCCCGGAACTGGTAAAACTATGCTTGCTAAAGCT GTTGCTAATCACACAACAGCCACGTTTATTAGAGTCGTTGGGTCAGAGTTTGTACAAAAA TATTTGGGTGAAGGCCCAAGGATGGTCCGCGACGTATTTCGTTTGGCAAGAGAAAACTCC CCAGCAATAGTGTTTATTGATGAAGTAGATTCAATTGCAACTAAACGTTTTGATGCACAA ACTGGGGCAGATAGGGAAGTTCAACGTATTTTGCTCGAGCTTTTAAACCAAATGGATGGA TTTGACCAAACAACAAATGTAAAAGTAATTATGGCGACTAACAGAGCAGATACCCTTGAT CCTGCGCTATTGAGGCCCGGTAGACTTGACCGAAAAATAGAATTCCCATTACCTGATAGA AGGCAAAGGAGATTGATATTCCAGACTATTACTGCAAAGATGAACTTGAGTGAAGAAGTT GATCTTGAAGAATATGTCTCCAGACCAGAAAAAATATCTGCAGCTGATATAGCCGCGATC TCTCAAGAGGCCGGTATGCAAGCTGTAAGGAAAAATAGATATGTTATTCTACCTAAGGAT TTTGAAAAGGGATGGAAGATACACGTAAAAAAGAGTGATAGAGATTTTGATTTCTATAGT GTATAG
  • Download Fasta

  • Fasta :-

    MACSLAKSQTIMSGNIDREKYLYGSLKELEKELNFLSIQEDYIKDEQKGLKREFQRAKEE IKRIQSVPLVIGQFLEMIDSRYGIVSSTAGSNYYVRVLSTINREDLKPPASVALHRHSHA IVDILPPEADSSIQMLQMQEKPDVTYSDIGGMDIQKQEVREAVELPLVCPELYQQIGIDP PTGVLLYGPPGTGKTMLAKAVANHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENS PAIVFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD PALLRPGRLDRKIEFPLPDRRQRRLIFQTITAKMNLSEEVDLEEYVSRPEKISAADIAAI SQEAGMQAVRKNRYVILPKDFEKGWKIHVKKSDRDFDFYSV

  • title: ATP binding site
  • coordinates: P189,P190,G191,T192,G193,K194,T195,M196,D247,N294
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd4_254025 SYLYGSLKEL0.995unspcgd4_2540392 SHVKKSDRDF0.998unsp

cgd4_2540      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India