cgd4_4160 | Uncharacterized protein

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_IDPredictionOTHERSPmTPCS_Position
cgd4_4160SP0.2160770.7732100.010712CS pos: 23-24. LKS-IS. Pr: 0.2629
No Results

  • Fasta :-

    >cgd4_4160 MIYNLFNLKSFVFVAALHGGLKSISYGNGYFDDIDENNKXFEXIAKDLQASAGKILNNND IHKLNYFYDQIGNIAKTVYPIKGGFEDWSLYGYNVSHILCSDYIQKSHSANKGGSLTFLI ETDHQKTPNQDTLGSKSDLFSLIDLDKLSIQPSHITRNIRMLLKLTEYTYPDIIFFNKPP STVYFGQTFILYIAIIGCYSFSNLRIKLENNNNNNXNNNNXINHYXNTXLNSEQQPIYLN FYVNEGLDGLQNTIYYKRCSSLFLNNQEIQDILDNXSXYTXXDKCNESNLLTXIVNRSFR VKNKCKSIYQFNKFXPIXILXRYRMRQQFLIL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd4_4160.fa Sequence name : cgd4_4160 Sequence length : 332 VALUES OF COMPUTED PARAMETERS Coef20 : 3.950 CoefTot : -1.232 ChDiff : 3 ZoneTo : 31 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.659 1.624 0.337 0.703 MesoH : -0.425 0.358 -0.332 0.232 MuHd_075 : 21.821 15.122 6.735 4.904 MuHd_095 : 17.309 15.118 6.895 4.225 MuHd_100 : 17.518 16.782 6.308 4.477 MuHd_105 : 21.613 18.534 6.806 5.317 Hmax_075 : 18.433 16.400 2.398 5.840 Hmax_095 : 17.600 20.500 3.792 5.443 Hmax_100 : 13.800 15.200 3.406 5.600 Hmax_105 : 18.200 18.300 3.787 6.860 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7407 0.2593 DFMC : 0.8257 0.1743
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 332 cgd4_4160 MIYNLFNLKSFVFVAALHGGLKSISYGNGYFDDIDENNKXFEXIAKDLQASAGKILNNNDIHKLNYFYDQIGNIAKTVYP 80 IKGGFEDWSLYGYNVSHILCSDYIQKSHSANKGGSLTFLIETDHQKTPNQDTLGSKSDLFSLIDLDKLSIQPSHITRNIR 160 MLLKLTEYTYPDIIFFNKPPSTVYFGQTFILYIAIIGCYSFSNLRIKLENNNNNNXNNNNXINHYXNTXLNSEQQPIYLN 240 FYVNEGLDGLQNTIYYKRCSSLFLNNQEIQDILDNXSXYTXXDKCNESNLLTXIVNRSFRVKNKCKSIYQFNKFXPIXIL 320 XRYRMRQQFLIL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd4_4160 9 YNLFNLK|SF 0.060 . cgd4_4160 22 ALHGGLK|SI 0.093 . cgd4_4160 39 DIDENNK|XF 0.061 . cgd4_4160 46 XFEXIAK|DL 0.080 . cgd4_4160 54 LQASAGK|IL 0.064 . cgd4_4160 63 NNNDIHK|LN 0.062 . cgd4_4160 76 QIGNIAK|TV 0.088 . cgd4_4160 82 KTVYPIK|GG 0.060 . cgd4_4160 106 CSDYIQK|SH 0.081 . cgd4_4160 112 KSHSANK|GG 0.067 . cgd4_4160 126 IETDHQK|TP 0.060 . cgd4_4160 136 QDTLGSK|SD 0.066 . cgd4_4160 147 SLIDLDK|LS 0.059 . cgd4_4160 157 QPSHITR|NI 0.123 . cgd4_4160 160 HITRNIR|ML 0.200 . cgd4_4160 164 NIRMLLK|LT 0.064 . cgd4_4160 178 DIIFFNK|PP 0.071 . cgd4_4160 205 YSFSNLR|IK 0.062 . cgd4_4160 207 FSNLRIK|LE 0.063 . cgd4_4160 257 QNTIYYK|RC 0.057 . cgd4_4160 258 NTIYYKR|CS 0.157 . cgd4_4160 284 XYTXXDK|CN 0.068 . cgd4_4160 297 LTXIVNR|SF 0.137 . cgd4_4160 300 IVNRSFR|VK 0.270 . cgd4_4160 302 NRSFRVK|NK 0.095 . cgd4_4160 304 SFRVKNK|CK 0.087 . cgd4_4160 306 RVKNKCK|SI 0.101 . cgd4_4160 313 SIYQFNK|FX 0.073 . cgd4_4160 322 PIXILXR|YR 0.096 . cgd4_4160 324 XILXRYR|MR 0.083 . cgd4_4160 326 LXRYRMR|QQ 0.103 . ____________________________^_________________

  • Fasta :-

    >cgd4_4160 AAATCTACAAATATAACAGTGAAAAAGGACTATATTGKTGGTGAATCAAAATGTCAGTAT TTACATATTAAGCTTGGAATATCAAATATTAATTATGATGTACCAAATATATTATTCATC TCTGGAATACATGGAGATGAAAAATTAGGTGTAGAAATTGCTACTGAATTTATAAGCTCT ATTTGTGATCAATATATTAATCATAATAATATTGGAATCAAGTATCTTTTAAGTACTAGA AATATATGGATTATTCCTATTGCTAATCCTTGGGGTTTTTATCATAATAAAAGAACTGAA GAAGAAATTGATGTTAATAGAGATTTTCCTTCAAAAAGTGGARAAAATTGTCTTAAAAGT GAAAGTTCTAAAATGATCTATAATTTGTTTAATCTTAAATCATTTGTATTTGTTGCAGCT TTACATGGTGGATTAAAAAGTATTTCTTATGGAAATGGCTATTTTGATGATATTGATGAA AATAACAAAABCTTTGAATYTATCGCTAAAGATTTACAAGCTTCAGCTGGTAAAATATTA AATAATAATGATATTCATAAATTAAATTACTTTTATGATCAAATTGGTAATATTGCAAAA ACTGTATATCCAATAAAAGGAGGATTTGAAGATTGGTCTTTATATGGTTATAATGTAAGT CATATATTATGTAGTGACTATATTCAAAAATCTCATTCTGCAAATAAAGGTGGATCTTTA ACTTTTCTTATAGAAACTGATCATCAAAAAACTCCTAATCAAGATACTTTAGGATCTAAA TCTGATCTATTTAGCCTTATTGATCTTGATAAACTTTCTATACAACCATCTCATATTACC AGAAATATTAGAATGTTACTTAAACTTACTGAATATACTTATCCAGATATTATTTTTTTT AATAAACCACCAAGTACCGTTTATTTTGGTCAAACTTTTATATTATATATAGCTATTATT GGCTGCTATTCTTTCAGTAATTTAAGGATTAAACTTGAAAATAATAACAATAATAATART AATAATAATAATRATATTAATCATTATTMTAATACTARCTTAAATTCTGAACAACAACCT ATTTATCTTAATTTTTATGTTAATGAAGGATTAGATGGTCTACAAAATACTATTTATTAT AAAAGATGTTCTTCTTTATTTCTAAATAATCAAGAAATCCAAGATATCCTTGATAATGAW TCTTTYTATACATSTRAAGATAAATGTAATGAATCTAACTTACTTACAAWAATTGTTAAC CGAAGTTTTAGAGTTAAAAATAAATGTAAATCTATATATCAATTTAATAAATTTWAGCCT ATARAAATTTTGKTAAGGTACCGAATGAGACAACAATTCTTAATACTATGA
  • Download Fasta

  • Fasta :-

    MIYNLFNLKSFVFVAALHGGLKSISYGNGYFDDIDENNKXFEXIAKDLQASAGKILNNND IHKLNYFYDQIGNIAKTVYPIKGGFEDWSLYGYNVSHILCSDYIQKSHSANKGGSLTFLI ETDHQKTPNQDTLGSKSDLFSLIDLDKLSIQPSHITRNIRMLLKLTEYTYPDIIFFNKPP STVYFGQTFILYIAIIGCYSFSNLRIKLENNNNNNXNNNNXINHYXNTXLNSEQQPIYLN FYVNEGLDGLQNTIYYKRCSSLFLNNQEIQDILDNXSXYTXXDKCNESNLLTXIVNRSFR VKNKCKSIYQFNKFXPIXILXRYRMRQQFLIL

    No Results
No Results
No Results
IDSitePeptideScoreMethod
cgd4_4160141 SSDLFSLIDL0.994unsp

cgd4_4160      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India