cgd5_1160 | SKP1/BTB/POZ domain containing protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd5_1160OTHER0.9995780.0001470.000275
No Results

  • Fasta :-

    >cgd5_1160 MPVINCSSTRLRTDLIDYIWTIEDFPLLRTLAMQRALPNHDRIISKKFGDQHNGTWFLTI FPAGVNCDGDMLSIYLFSYSEQIRIAQFEISLLDDKLNIIEGTTVSLSQPRIFNVHDSSW GWEDYMRIDIIDDTSLNDMSIKNSPSQAIPSPFGNDLGRTLSPDELIYFSDEGLDTYSVQ NHLLDGSSEIKSSEDNILNWERTVLKYFIFGGAIRVKINIKSFKDFIHSDGSVMVPNFLS NRIATQDYLWLANDISKLSKECSDKLCEKVTLNCGTELFHVPKFALAARSKYFQNFFLSN FSDSNAKYFSIPVGDASPYILRNALDYILTGDCRLLSDENIKNWKEIIDLFRFSDKYGIK SLYNACVPAIIANINSESVWATMIIAKQCNSDKILKSVEHFFKTSGDFSLIVNALVGHIL EYKNSIVKG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd5_1160.fa Sequence name : cgd5_1160 Sequence length : 429 VALUES OF COMPUTED PARAMETERS Coef20 : 4.439 CoefTot : 0.229 ChDiff : -11 ZoneTo : 13 KR : 2 DE : 0 CleavSite : 12 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.753 1.194 0.004 0.512 MesoH : -0.528 0.427 -0.382 0.238 MuHd_075 : 6.256 9.429 2.876 1.234 MuHd_095 : 23.026 18.991 5.553 5.114 MuHd_100 : 19.151 12.357 2.878 4.147 MuHd_105 : 11.992 3.012 1.686 2.382 Hmax_075 : -1.200 4.667 -1.282 1.580 Hmax_095 : 11.800 13.400 2.314 4.600 Hmax_100 : 12.600 11.100 1.729 4.140 Hmax_105 : 11.550 9.567 3.361 3.278 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5065 0.4935 DFMC : 0.6882 0.3118
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 429 cgd5_1160 MPVINCSSTRLRTDLIDYIWTIEDFPLLRTLAMQRALPNHDRIISKKFGDQHNGTWFLTIFPAGVNCDGDMLSIYLFSYS 80 EQIRIAQFEISLLDDKLNIIEGTTVSLSQPRIFNVHDSSWGWEDYMRIDIIDDTSLNDMSIKNSPSQAIPSPFGNDLGRT 160 LSPDELIYFSDEGLDTYSVQNHLLDGSSEIKSSEDNILNWERTVLKYFIFGGAIRVKINIKSFKDFIHSDGSVMVPNFLS 240 NRIATQDYLWLANDISKLSKECSDKLCEKVTLNCGTELFHVPKFALAARSKYFQNFFLSNFSDSNAKYFSIPVGDASPYI 320 LRNALDYILTGDCRLLSDENIKNWKEIIDLFRFSDKYGIKSLYNACVPAIIANINSESVWATMIIAKQCNSDKILKSVEH 400 FFKTSGDFSLIVNALVGHILEYKNSIVKG 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd5_1160 10 INCSSTR|LR 0.090 . cgd5_1160 12 CSSTRLR|TD 0.081 . cgd5_1160 29 EDFPLLR|TL 0.072 . cgd5_1160 35 RTLAMQR|AL 0.073 . cgd5_1160 42 ALPNHDR|II 0.147 . cgd5_1160 46 HDRIISK|KF 0.087 . cgd5_1160 47 DRIISKK|FG 0.185 . cgd5_1160 84 SYSEQIR|IA 0.111 . cgd5_1160 96 ISLLDDK|LN 0.059 . cgd5_1160 111 VSLSQPR|IF 0.083 . cgd5_1160 127 GWEDYMR|ID 0.080 . cgd5_1160 142 LNDMSIK|NS 0.059 . cgd5_1160 159 FGNDLGR|TL 0.111 . cgd5_1160 191 DGSSEIK|SS 0.091 . cgd5_1160 202 NILNWER|TV 0.094 . cgd5_1160 206 WERTVLK|YF 0.070 . cgd5_1160 215 IFGGAIR|VK 0.070 . cgd5_1160 217 GGAIRVK|IN 0.074 . cgd5_1160 221 RVKINIK|SF 0.083 . cgd5_1160 224 INIKSFK|DF 0.095 . cgd5_1160 242 PNFLSNR|IA 0.095 . cgd5_1160 257 LANDISK|LS 0.059 . cgd5_1160 260 DISKLSK|EC 0.083 . cgd5_1160 265 SKECSDK|LC 0.069 . cgd5_1160 269 SDKLCEK|VT 0.060 . cgd5_1160 283 ELFHVPK|FA 0.082 . cgd5_1160 289 KFALAAR|SK 0.141 . cgd5_1160 291 ALAARSK|YF 0.066 . cgd5_1160 307 FSDSNAK|YF 0.066 . cgd5_1160 322 ASPYILR|NA 0.093 . cgd5_1160 334 ILTGDCR|LL 0.078 . cgd5_1160 342 LSDENIK|NW 0.065 . cgd5_1160 345 ENIKNWK|EI 0.068 . cgd5_1160 352 EIIDLFR|FS 0.109 . cgd5_1160 356 LFRFSDK|YG 0.074 . cgd5_1160 360 SDKYGIK|SL 0.075 . cgd5_1160 387 ATMIIAK|QC 0.059 . cgd5_1160 393 KQCNSDK|IL 0.076 . cgd5_1160 396 NSDKILK|SV 0.120 . cgd5_1160 403 SVEHFFK|TS 0.069 . cgd5_1160 423 GHILEYK|NS 0.062 . cgd5_1160 428 YKNSIVK|G- 0.066 . ____________________________^_________________

  • Fasta :-

    >cgd5_1160 ATGCCTGTTATTAATTGCAGTTCAACACGTTTGAGAACTGACTTAATAGATTATATTTGG ACGATTGAAGATTTTCCTTTACTAAGAACGCTCGCAATGCAGCGTGCATTGCCTAATCAC GACAGAATAATAAGTAAAAAATTTGGTGATCAGCATAATGGAACTTGGTTTCTAACCATA TTTCCTGCAGGAGTAAACTGCGATGGTGATATGCTATCAATTTATTTATTTTCATACTCT GAACAAATCAGGATTGCACAATTTGAAATTTCTTTATTAGATGATAAGTTAAATATCATT GAGGGTACAACAGTCTCGCTTTCTCAACCTCGAATTTTCAATGTTCATGATTCAAGTTGG GGATGGGAGGATTATATGCGAATTGATATAATCGACGATACTAGTTTAAATGACATGAGT ATTAAAAATTCTCCAAGTCAAGCAATTCCCTCCCCATTTGGGAATGACCTGGGAAGAACG CTATCACCAGATGAATTAATTTATTTTTCGGATGAAGGCTTAGACACATATAGCGTTCAA AACCATTTATTAGATGGAAGCAGTGAAATAAAATCTTCTGAAGATAACATTTTGAATTGG GAGAGAACTGTACTTAAATATTTTATTTTTGGTGGTGCAATCCGTGTAAAAATAAATATC AAGTCATTTAAAGATTTTATTCATTCAGATGGGAGCGTAATGGTTCCTAATTTTTTATCA AACAGAATTGCTACTCAAGATTATTTATGGCTTGCAAACGACATTTCCAAACTTTCTAAA GAGTGCTCAGATAAATTATGCGAAAAAGTTACACTAAATTGCGGTACCGAGCTCTTTCAT GTCCCCAAGTTTGCACTTGCTGCTAGATCGAAGTACTTCCAGAATTTTTTTTTATCAAAC TTCTCAGATTCAAATGCTAAGTATTTTTCAATTCCAGTTGGCGATGCATCACCATATATT CTAAGAAATGCATTAGATTATATTTTAACTGGAGATTGCAGATTATTAAGTGATGAAAAC ATTAAAAACTGGAAGGAGATAATAGATTTATTCAGATTTTCAGACAAGTATGGAATTAAA TCGTTGTACAATGCATGCGTGCCCGCAATTATTGCAAATATCAATTCAGAATCCGTATGG GCTACTATGATAATTGCAAAACAATGTAATTCAGATAAAATTCTTAAATCAGTGGAACAT TTTTTTAAGACAAGTGGGGATTTTTCTTTAATTGTAAATGCTCTAGTTGGCCACATATTA GAATATAAAAACTCTATAGTTAAAGGCTAA
  • Download Fasta

  • Fasta :-

    MPVINCSSTRLRTDLIDYIWTIEDFPLLRTLAMQRALPNHDRIISKKFGDQHNGTWFLTI FPAGVNCDGDMLSIYLFSYSEQIRIAQFEISLLDDKLNIIEGTTVSLSQPRIFNVHDSSW GWEDYMRIDIIDDTSLNDMSIKNSPSQAIPSPFGNDLGRTLSPDELIYFSDEGLDTYSVQ NHLLDGSSEIKSSEDNILNWERTVLKYFIFGGAIRVKINIKSFKDFIHSDGSVMVPNFLS NRIATQDYLWLANDISKLSKECSDKLCEKVTLNCGTELFHVPKFALAARSKYFQNFFLSN FSDSNAKYFSIPVGDASPYILRNALDYILTGDCRLLSDENIKNWKEIIDLFRFSDKYGIK SLYNACVPAIIANINSESVWATMIIAKQCNSDKILKSVEHFFKTSGDFSLIVNALVGHIL EYKNSIVKG

  • title: putative substrate binding site
  • coordinates: Y75,S119,W120,G121
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd5_1160337 SCRLLSDENI0.992unspcgd5_1160337 SCRLLSDENI0.992unspcgd5_1160337 SCRLLSDENI0.992unspcgd5_1160354 SLFRFSDKYG0.991unspcgd5_1160192 SSEIKSSEDN0.997unspcgd5_1160259 SISKLSKECS0.995unsp

cgd5_1160      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India