cgd5_2350 | Peptidase C19, ubiquitin carboxyl-terminal hydrolase

_IDPredictionOTHERSPmTPCS_Position
cgd5_2350OTHER0.9999270.0000520.000020
No Results

  • Fasta :-

    >cgd5_2350 MGDHSEKDGERCPYLSSIKRSVLDFDYEKICSVTLREEHIYCCLVCGINYQGKGKGSMAY KHSLELKHHLFINLTNSSIICLPNDYEIYEHSLEDIKGYLQPRFNSEIISSSLYDVSRTF DGIEFSPGFIGLSNFGNNDSLNSIILILSRITEFRDLCLSYQLYSKEIEKRIPDPLLFSI IESIQKIYNPNNLKGKFSPYNLVKIIEKKSNGKFSFSKISNISTSSNSFIQSNVGTQNST IIDPMALFSWITYNLKKKIDKYLRKFQIKFIPDIDKNTNKSNMNIFDVCIKGELYNKASK YPNNKKSESSTDNLMKSKKCSELKSTASICFNCLSLTLPSIIETTMGISNSAQSNEDKTI SQIPIYQLLDSKFFSSSSSSQLISKLPYYLFIHFSRFSKANLNLEKNKTLVSFPLIDLDL SSYIHPDYISLNPCTKYNLIANISHKGTIQSGKFLTQLLHPTRNEWIEIEDINVKVVLPQ EILLNETYIIVYKRSDLI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd5_2350.fa Sequence name : cgd5_2350 Sequence length : 498 VALUES OF COMPUTED PARAMETERS Coef20 : 3.142 CoefTot : -0.250 ChDiff : 7 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.541 1.506 0.360 0.506 MesoH : -0.125 0.242 -0.277 0.197 MuHd_075 : 15.411 5.008 2.227 4.161 MuHd_095 : 33.106 7.645 8.198 3.810 MuHd_100 : 32.179 13.793 9.395 3.840 MuHd_105 : 29.587 18.171 10.222 4.770 Hmax_075 : 0.933 -0.350 -2.350 1.960 Hmax_095 : 7.875 -0.100 1.272 1.286 Hmax_100 : 8.400 2.700 1.573 1.650 Hmax_105 : 9.333 4.550 2.930 2.322 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9587 0.0413 DFMC : 0.9496 0.0504
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 498 cgd5_2350 MGDHSEKDGERCPYLSSIKRSVLDFDYEKICSVTLREEHIYCCLVCGINYQGKGKGSMAYKHSLELKHHLFINLTNSSII 80 CLPNDYEIYEHSLEDIKGYLQPRFNSEIISSSLYDVSRTFDGIEFSPGFIGLSNFGNNDSLNSIILILSRITEFRDLCLS 160 YQLYSKEIEKRIPDPLLFSIIESIQKIYNPNNLKGKFSPYNLVKIIEKKSNGKFSFSKISNISTSSNSFIQSNVGTQNST 240 IIDPMALFSWITYNLKKKIDKYLRKFQIKFIPDIDKNTNKSNMNIFDVCIKGELYNKASKYPNNKKSESSTDNLMKSKKC 320 SELKSTASICFNCLSLTLPSIIETTMGISNSAQSNEDKTISQIPIYQLLDSKFFSSSSSSQLISKLPYYLFIHFSRFSKA 400 NLNLEKNKTLVSFPLIDLDLSSYIHPDYISLNPCTKYNLIANISHKGTIQSGKFLTQLLHPTRNEWIEIEDINVKVVLPQ 480 EILLNETYIIVYKRSDLI 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd5_2350 7 MGDHSEK|DG 0.069 . cgd5_2350 11 SEKDGER|CP 0.064 . cgd5_2350 19 PYLSSIK|RS 0.050 . cgd5_2350 20 YLSSIKR|SV 0.420 . cgd5_2350 29 LDFDYEK|IC 0.062 . cgd5_2350 36 ICSVTLR|EE 0.103 . cgd5_2350 53 GINYQGK|GK 0.081 . cgd5_2350 55 NYQGKGK|GS 0.077 . cgd5_2350 61 KGSMAYK|HS 0.072 . cgd5_2350 67 KHSLELK|HH 0.066 . cgd5_2350 97 HSLEDIK|GY 0.057 . cgd5_2350 103 KGYLQPR|FN 0.136 . cgd5_2350 118 SLYDVSR|TF 0.134 . cgd5_2350 150 IILILSR|IT 0.073 . cgd5_2350 155 SRITEFR|DL 0.139 . cgd5_2350 166 SYQLYSK|EI 0.069 . cgd5_2350 170 YSKEIEK|RI 0.058 . cgd5_2350 171 SKEIEKR|IP 0.225 . cgd5_2350 186 IIESIQK|IY 0.057 . cgd5_2350 194 YNPNNLK|GK 0.056 . cgd5_2350 196 PNNLKGK|FS 0.078 . cgd5_2350 204 SPYNLVK|II 0.082 . cgd5_2350 208 LVKIIEK|KS 0.059 . cgd5_2350 209 VKIIEKK|SN 0.176 . cgd5_2350 213 EKKSNGK|FS 0.070 . cgd5_2350 218 GKFSFSK|IS 0.066 . cgd5_2350 256 WITYNLK|KK 0.055 . cgd5_2350 257 ITYNLKK|KI 0.147 . cgd5_2350 258 TYNLKKK|ID 0.099 . cgd5_2350 261 LKKKIDK|YL 0.074 . cgd5_2350 264 KIDKYLR|KF 0.072 . cgd5_2350 265 IDKYLRK|FQ 0.102 . cgd5_2350 269 LRKFQIK|FI 0.096 . cgd5_2350 276 FIPDIDK|NT 0.063 . cgd5_2350 280 IDKNTNK|SN 0.094 . cgd5_2350 291 IFDVCIK|GE 0.054 . cgd5_2350 297 KGELYNK|AS 0.052 . cgd5_2350 300 LYNKASK|YP 0.062 . cgd5_2350 305 SKYPNNK|KS 0.067 . cgd5_2350 306 KYPNNKK|SE 0.116 . cgd5_2350 316 STDNLMK|SK 0.087 . cgd5_2350 318 DNLMKSK|KC 0.066 . cgd5_2350 319 NLMKSKK|CS 0.116 . cgd5_2350 324 KKCSELK|ST 0.080 . cgd5_2350 358 AQSNEDK|TI 0.090 . cgd5_2350 372 YQLLDSK|FF 0.060 . cgd5_2350 385 SSQLISK|LP 0.060 . cgd5_2350 396 LFIHFSR|FS 0.117 . cgd5_2350 399 HFSRFSK|AN 0.139 . cgd5_2350 406 ANLNLEK|NK 0.055 . cgd5_2350 408 LNLEKNK|TL 0.059 . cgd5_2350 436 SLNPCTK|YN 0.070 . cgd5_2350 446 IANISHK|GT 0.096 . cgd5_2350 453 GTIQSGK|FL 0.088 . cgd5_2350 463 QLLHPTR|NE 0.082 . cgd5_2350 475 IEDINVK|VV 0.065 . cgd5_2350 493 TYIIVYK|RS 0.063 . cgd5_2350 494 YIIVYKR|SD 0.241 . ____________________________^_________________

  • Fasta :-

    >cgd5_2350 ATGGGTGACCACTCTGAGAAGGATGGAGAGAGATGCCCGTACTTATCTAGCATTAAAAGA AGTGTGTTAGACTTTGACTATGAGAAAATCTGCAGCGTGACATTAAGGGAGGAACATATA TACTGTTGTCTAGTATGTGGAATAAATTACCAGGGGAAAGGAAAGGGTTCTATGGCATAT AAGCACTCTCTGGAACTAAAACACCATTTATTTATTAATTTAACTAACTCAAGCATAATT TGTCTTCCAAACGATTACGAGATTTATGAACATTCTCTTGAAGATATTAAAGGATACCTA CAGCCAAGATTTAATTCTGAGATCATCTCCTCATCGCTATATGACGTGTCAAGAACTTTT GATGGGATTGAGTTTTCTCCAGGATTTATTGGTTTGAGTAATTTTGGTAATAATGACTCT TTAAATTCAATCATTTTAATACTATCTCGAATCACTGAATTTAGAGACTTATGTCTTAGT TACCAGCTTTATAGCAAGGAAATTGAGAAAAGAATTCCAGATCCACTCTTATTCAGTATC ATTGAGTCGATTCAAAAAATCTATAATCCAAATAATCTTAAAGGGAAATTTTCTCCATAT AACCTTGTAAAAATTATAGAGAAGAAATCTAATGGAAAATTTTCATTTTCAAAAATATCC AATATTTCAACGTCTTCTAATTCATTCATACAATCAAATGTTGGTACCCAAAACTCAACA ATTATTGATCCAATGGCACTATTTTCTTGGATAACATATAATTTAAAGAAAAAGATTGAT AAATATCTCAGAAAATTTCAAATTAAATTCATTCCAGATATTGATAAGAATACTAATAAA TCCAATATGAATATTTTTGATGTATGCATTAAGGGAGAACTATATAACAAAGCCAGTAAA TATCCAAATAACAAAAAATCTGAATCTAGTACAGATAATTTAATGAAATCTAAAAAATGT TCTGAATTAAAATCTACTGCAAGTATTTGTTTTAACTGCCTATCCCTAACTCTACCTTCA ATTATTGAAACTACAATGGGTATATCAAATAGTGCTCAAAGTAATGAAGATAAGACAATT TCCCAGATACCAATATATCAGCTACTAGACTCCAAGTTCTTCTCTTCCTCTTCTAGTTCC CAATTAATATCGAAACTACCTTATTACTTATTTATTCATTTTTCCAGATTTTCAAAGGCT AATTTAAATCTGGAAAAAAACAAAACTTTGGTTTCTTTCCCACTTATAGACTTAGATCTT TCTTCATATATTCATCCAGATTATATTTCATTGAACCCATGCACTAAATATAACTTAATT GCTAATATATCTCATAAAGGTACAATTCAAAGTGGAAAATTCCTAACTCAACTCTTGCAT CCTACTAGAAACGAATGGATTGAAATTGAGGATATCAATGTCAAGGTCGTTCTTCCTCAG GAAATACTTCTTAACGAAACTTATATAATCGTTTATAAGAGATCTGACTTAATTTAA
  • Download Fasta

  • Fasta :-

    MGDHSEKDGERCPYLSSIKRSVLDFDYEKICSVTLREEHIYCCLVCGINYQGKGKGSMAY KHSLELKHHLFINLTNSSIICLPNDYEIYEHSLEDIKGYLQPRFNSEIISSSLYDVSRTF DGIEFSPGFIGLSNFGNNDSLNSIILILSRITEFRDLCLSYQLYSKEIEKRIPDPLLFSI IESIQKIYNPNNLKGKFSPYNLVKIIEKKSNGKFSFSKISNISTSSNSFIQSNVGTQNST IIDPMALFSWITYNLKKKIDKYLRKFQIKFIPDIDKNTNKSNMNIFDVCIKGELYNKASK YPNNKKSESSTDNLMKSKKCSELKSTASICFNCLSLTLPSIIETTMGISNSAQSNEDKTI SQIPIYQLLDSKFFSSSSSSQLISKLPYYLFIHFSRFSKANLNLEKNKTLVSFPLIDLDL SSYIHPDYISLNPCTKYNLIANISHKGTIQSGKFLTQLLHPTRNEWIEIEDINVKVVLPQ EILLNETYIIVYKRSDLI

  • title: Active Site
  • coordinates: N134,D139,K453,D471
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd5_235092 SIYEHSLEDI0.991unspcgd5_235092 SIYEHSLEDI0.991unspcgd5_235092 SIYEHSLEDI0.991unspcgd5_2350307 SNNKKSESST0.992unspcgd5_2350309 SKKSESSTDN0.996unspcgd5_2350317 SNLMKSKKCS0.995unspcgd5_2350354 SNSAQSNEDK0.997unspcgd5_23505 SMGDHSEKDG0.998unspcgd5_235021 SSIKRSVLDF0.993unsp

cgd5_2350      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India