cgd5_2360 | PDZ domain containing protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd5_2360OTHER0.9999580.0000180.000024
No Results

  • Fasta :-

    >cgd5_2360 MEELAKRKGEIEKEVSELTEFLNSCGPDVGISGKLVDSEGFPRSDIDIYAVRRARNRIAL LNTDYSNVMKEIEEKLFDIHSKEKTYVPINKSEKSQRCNASECLNYPFGYVNSVLEGSPA FQSGIRTGDLLLEFGSLKSESELHSQEESKHLIGQLPGIVQDNLDKSIKVTLLRSNSKQP EELLSEFSTFIDNSNLSYKDLNLLEFEKKSIDLVPKKWQGKGYLGCNIAFLHKFVEK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd5_2360.fa Sequence name : cgd5_2360 Sequence length : 237 VALUES OF COMPUTED PARAMETERS Coef20 : 3.123 CoefTot : 0.000 ChDiff : -6 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.224 0.418 -0.182 0.319 MesoH : -1.109 -0.170 -0.540 0.100 MuHd_075 : 40.201 20.528 10.856 7.170 MuHd_095 : 34.359 20.085 9.701 4.775 MuHd_100 : 43.060 27.614 11.792 7.314 MuHd_105 : 40.142 27.890 10.779 7.982 Hmax_075 : -7.350 5.833 -3.632 2.123 Hmax_095 : -4.500 6.200 -3.106 1.820 Hmax_100 : -2.300 10.800 -2.364 3.100 Hmax_105 : -12.367 5.512 -4.474 0.630 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7821 0.2179 DFMC : 0.7503 0.2497
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 237 cgd5_2360 MEELAKRKGEIEKEVSELTEFLNSCGPDVGISGKLVDSEGFPRSDIDIYAVRRARNRIALLNTDYSNVMKEIEEKLFDIH 80 SKEKTYVPINKSEKSQRCNASECLNYPFGYVNSVLEGSPAFQSGIRTGDLLLEFGSLKSESELHSQEESKHLIGQLPGIV 160 QDNLDKSIKVTLLRSNSKQPEELLSEFSTFIDNSNLSYKDLNLLEFEKKSIDLVPKKWQGKGYLGCNIAFLHKFVEK 240 ................................................................................ 80 ................................................................................ 160 ............................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd5_2360 6 -MEELAK|RK 0.073 . cgd5_2360 7 MEELAKR|KG 0.129 . cgd5_2360 8 EELAKRK|GE 0.094 . cgd5_2360 13 RKGEIEK|EV 0.085 . cgd5_2360 34 DVGISGK|LV 0.079 . cgd5_2360 43 DSEGFPR|SD 0.125 . cgd5_2360 52 IDIYAVR|RA 0.080 . cgd5_2360 53 DIYAVRR|AR 0.096 . cgd5_2360 55 YAVRRAR|NR 0.231 . cgd5_2360 57 VRRARNR|IA 0.096 . cgd5_2360 70 DYSNVMK|EI 0.093 . cgd5_2360 75 MKEIEEK|LF 0.061 . cgd5_2360 82 LFDIHSK|EK 0.065 . cgd5_2360 84 DIHSKEK|TY 0.067 . cgd5_2360 91 TYVPINK|SE 0.080 . cgd5_2360 94 PINKSEK|SQ 0.075 . cgd5_2360 97 KSEKSQR|CN 0.092 . cgd5_2360 126 AFQSGIR|TG 0.069 . cgd5_2360 138 LEFGSLK|SE 0.075 . cgd5_2360 150 HSQEESK|HL 0.091 . cgd5_2360 166 VQDNLDK|SI 0.070 . cgd5_2360 169 NLDKSIK|VT 0.054 . cgd5_2360 174 IKVTLLR|SN 0.155 . cgd5_2360 178 LLRSNSK|QP 0.068 . cgd5_2360 199 NSNLSYK|DL 0.085 . cgd5_2360 208 NLLEFEK|KS 0.057 . cgd5_2360 209 LLEFEKK|SI 0.162 . cgd5_2360 216 SIDLVPK|KW 0.067 . cgd5_2360 217 IDLVPKK|WQ 0.123 . cgd5_2360 221 PKKWQGK|GY 0.069 . cgd5_2360 233 NIAFLHK|FV 0.098 . cgd5_2360 237 LHKFVEK|-- 0.070 . ____________________________^_________________

  • Fasta :-

    >cgd5_2360 AATACTAATAATACTAGATATAATATTAATGTAAATATGGAAGAATTAGCAAAGAGAAAG GGTGAAATAGAGAAGGAGGTAAGTGAATTAACGGAGTTCTTGAATTCATGTGGTCCAGAT GTTGGTATTTCTGGAAAGCTTGTAGATAGTGAGGGGTTTCCAAGGTCAGATATAGATATA TATGCAGTAAGAAGAGCAAGAAATAGGATTGCATTATTAAACACTGATTATTCGAATGTT ATGAAAGAAATTGAAGAAAAACTATTTGATATTCATAGCAAAGAGAAGACTTATGTTCCA ATTAATAAGTCAGAAAAAAGCCAAAGATGCAATGCTTCAGAATGTCTAAATTATCCATTT GGATATGTAAATAGTGTTTTGGAAGGATCACCAGCATTTCAAAGTGGTATAAGGACAGGA GATTTATTATTGGAATTTGGAAGCCTTAAATCAGAATCCGAGTTACATTCACAAGAAGAA TCAAAACATCTGATAGGTCAATTGCCGGGGATTGTACAAGATAATTTAGATAAATCAATC AAAGTTACTCTATTAAGAAGCAATAGCAAACAACCTGAGGAACTTCTTTCCGAGTTTTCA ACATTTATAGATAATTCTAACTTAAGCTATAAAGACCTAAATTTACTTGAATTCGAGAAA AAGAGTATCGATCTAGTTCCCAAAAAATGGCAAGGAAAAGGTTATTTGGGATGTAATATA GCGTTCTTACACAAGTTTGTAGAAAAATAG
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  • Fasta :-

    MEELAKRKGEIEKEVSELTEFLNSCGPDVGISGKLVDSEGFPRSDIDIYAVRRARNRIAL LNTDYSNVMKEIEEKLFDIHSKEKTYVPINKSEKSQRCNASECLNYPFGYVNSVLEGSPA FQSGIRTGDLLLEFGSLKSESELHSQEESKHLIGQLPGIVQDNLDKSIKVTLLRSNSKQP EELLSEFSTFIDNSNLSYKDLNLLEFEKKSIDLVPKKWQGKGYLGCNIAFLHKFVEK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd5_2360197 SNSNLSYKDL0.997unspcgd5_2360197 SNSNLSYKDL0.997unspcgd5_2360197 SNSNLSYKDL0.997unspcgd5_2360145 SSELHSQEES0.998unspcgd5_2360167 SNLDKSIKVT0.992unsp

cgd5_2360      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India