cgd5_3330 | Derlin

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_IDPredictionOTHERSPmTPCS_Position
cgd5_3330OTHER0.9997650.0001030.000132
No Results

  • Fasta :-

    >cgd5_3330 MLVVNNIPPVTKVYFAISTLLMVLCTLDIISPFNLYLNWLLVINEYQIWRLATCFFFFGT FSLHFFWNAYVLLYYCASLEDVVFHSRPADFLWMLITCSWMLLLLSYFFGAGYLFSGAVI NVMTYIWGRRNPSARMSVFIFTVRAPYLPWVLMGMGLVIGWRPWDNLMGIIVGHTYYFFE DIYPLMPISNGFRLFKTPKIITKLMKQEQN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd5_3330.fa Sequence name : cgd5_3330 Sequence length : 210 VALUES OF COMPUTED PARAMETERS Coef20 : 4.183 CoefTot : -0.878 ChDiff : 4 ZoneTo : 79 KR : 2 DE : 2 CleavSite : 52 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.282 2.082 0.356 0.727 MesoH : 1.092 1.156 0.021 0.542 MuHd_075 : 26.136 18.484 5.710 5.868 MuHd_095 : 17.591 14.805 6.550 4.846 MuHd_100 : 20.680 20.337 6.614 5.576 MuHd_105 : 30.606 27.277 8.873 7.203 Hmax_075 : 13.037 14.350 3.551 5.268 Hmax_095 : 17.412 17.000 4.018 6.169 Hmax_100 : 13.700 28.100 2.796 6.810 Hmax_105 : 17.900 19.600 4.200 6.310 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7877 0.2123 DFMC : 0.5492 0.4508
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 210 cgd5_3330 MLVVNNIPPVTKVYFAISTLLMVLCTLDIISPFNLYLNWLLVINEYQIWRLATCFFFFGTFSLHFFWNAYVLLYYCASLE 80 DVVFHSRPADFLWMLITCSWMLLLLSYFFGAGYLFSGAVINVMTYIWGRRNPSARMSVFIFTVRAPYLPWVLMGMGLVIG 160 WRPWDNLMGIIVGHTYYFFEDIYPLMPISNGFRLFKTPKIITKLMKQEQN 240 ................................................................................ 80 ................................................................................ 160 .................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd5_3330 12 NIPPVTK|VY 0.061 . cgd5_3330 50 NEYQIWR|LA 0.081 . cgd5_3330 87 DVVFHSR|PA 0.082 . cgd5_3330 129 MTYIWGR|RN 0.085 . cgd5_3330 130 TYIWGRR|NP 0.117 . cgd5_3330 135 RRNPSAR|MS 0.168 . cgd5_3330 144 VFIFTVR|AP 0.064 . cgd5_3330 162 GLVIGWR|PW 0.087 . cgd5_3330 193 PISNGFR|LF 0.073 . cgd5_3330 196 NGFRLFK|TP 0.111 . cgd5_3330 199 RLFKTPK|II 0.079 . cgd5_3330 203 TPKIITK|LM 0.072 . cgd5_3330 206 IITKLMK|QE 0.065 . ____________________________^_________________

  • Fasta :-

    >cgd5_3330 TAGAAAAGTTGGCTTGTAAAATAACAAGAAGAAGAAAAAAATGTTGGTAGTGAATAATAT TCCGCCAGTAACGAAGGTCTACTTCGCTATCTCAACCTTATTGATGGTGTTATGCACTCT AGATATTATTTCACCCTTTAATTTGTATTTAAATTGGCTACTTGTGATCAACGAATACCA AATATGGAGACTTGCAACTTGTTTTTTCTTTTTTGGAACATTCAGCCTTCACTTCTTTTG GAATGCCTATGTACTTCTATATTACTGTGCGTCTTTGGAAGATGTAGTTTTCCACAGTAG ACCAGCTGACTTTCTTTGGATGCTAATAACATGTTCTTGGATGCTTCTTCTCCTTTCATA TTTCTTTGGAGCTGGATATCTTTTTAGTGGAGCAGTTATCAACGTAATGACTTATATTTG GGGAAGAAGAAATCCATCTGCTAGAATGTCGGTTTTCATATTCACCGTAAGAGCTCCTTA CTTGCCATGGGTATTAATGGGTATGGGTTTAGTCATTGGATGGAGACCTTGGGATAACTT AATGGGAATTATTGTAGGACACACCTACTACTTCTTTGAAGATATTTACCCTTTAATGCC AATTTCTAATGGTTTTCGACTATTTAAGACCCCCAAAATTATTACTAAATTAATGAAACA AGAACAAAATTAAAAGGTAAAAAAAAACAATAAGCTGGTAGCTTCTAAAAATTTAATGAT TTAAATATATATATATATAAATATATTCATACATAGTTTGCATGTAATGCATGCAAACTA TGTATTAAAGCCTAAATATTCCCAAAATGATTCTATTAAGACTTTTTTTAAGGCTATTTT AACAAAAGCTAGCTATTGTAAT
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  • Fasta :-

    MLVVNNIPPVTKVYFAISTLLMVLCTLDIISPFNLYLNWLLVINEYQIWRLATCFFFFGT FSLHFFWNAYVLLYYCASLEDVVFHSRPADFLWMLITCSWMLLLLSYFFGAGYLFSGAVI NVMTYIWGRRNPSARMSVFIFTVRAPYLPWVLMGMGLVIGWRPWDNLMGIIVGHTYYFFE DIYPLMPISNGFRLFKTPKIITKLMKQEQN

    No Results
No Results
No Results
IDSitePeptideScoreMethod
cgd5_3330133 SRRNPSARMS0.994unsp

cgd5_3330      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India