cgd5_4210 | Proteasome subunit beta type

_IDPredictionOTHERSPmTPCS_Position
cgd5_4210OTHER0.9999040.0000810.000014
No Results

  • Fasta :-

    >cgd5_4210 MTFDFLDSGIEAINHYGIRNENLKNSGFLRLDFFGNDKDEEDFVERIYEETFQYAKIENP CKFVSEYNKGEIRKMMNRGTTTLGFIYQGGVILAVDSRASQGSYIASQEVKKIIQINDFL LGTMAGGAADCSYWERVLSKLCRLYELRNGERISVAGASKMITNIFFHYRAYDLSAGIMI AGFDKDGPHLYYVDNEGSRVKDCKFSVGSGSLYAYGVLDSGYRYDLTDEEAIDLGKRAIV IATNRDGGSGGLVRVYQINKNGVIKHVPGEDVSELHYAYSKKQGTDPTKM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd5_4210.fa Sequence name : cgd5_4210 Sequence length : 290 VALUES OF COMPUTED PARAMETERS Coef20 : 3.470 CoefTot : 0.000 ChDiff : -5 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.476 1.241 0.207 0.600 MesoH : -0.698 0.283 -0.349 0.176 MuHd_075 : 3.801 4.530 2.918 1.068 MuHd_095 : 34.580 19.545 9.846 6.078 MuHd_100 : 34.034 17.429 9.822 5.580 MuHd_105 : 31.686 15.806 9.068 5.061 Hmax_075 : 6.067 8.900 0.374 4.020 Hmax_095 : 16.887 14.000 2.944 5.819 Hmax_100 : 15.900 14.100 3.229 6.010 Hmax_105 : 15.167 16.217 3.227 6.813 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9136 0.0864 DFMC : 0.9315 0.0685
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 290 cgd5_4210 MTFDFLDSGIEAINHYGIRNENLKNSGFLRLDFFGNDKDEEDFVERIYEETFQYAKIENPCKFVSEYNKGEIRKMMNRGT 80 TTLGFIYQGGVILAVDSRASQGSYIASQEVKKIIQINDFLLGTMAGGAADCSYWERVLSKLCRLYELRNGERISVAGASK 160 MITNIFFHYRAYDLSAGIMIAGFDKDGPHLYYVDNEGSRVKDCKFSVGSGSLYAYGVLDSGYRYDLTDEEAIDLGKRAIV 240 IATNRDGGSGGLVRVYQINKNGVIKHVPGEDVSELHYAYSKKQGTDPTKM 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd5_4210 19 INHYGIR|NE 0.085 . cgd5_4210 24 IRNENLK|NS 0.072 . cgd5_4210 30 KNSGFLR|LD 0.101 . cgd5_4210 38 DFFGNDK|DE 0.062 . cgd5_4210 46 EEDFVER|IY 0.084 . cgd5_4210 56 ETFQYAK|IE 0.057 . cgd5_4210 62 KIENPCK|FV 0.107 . cgd5_4210 69 FVSEYNK|GE 0.068 . cgd5_4210 73 YNKGEIR|KM 0.080 . cgd5_4210 74 NKGEIRK|MM 0.105 . cgd5_4210 78 IRKMMNR|GT 0.130 . cgd5_4210 98 ILAVDSR|AS 0.094 . cgd5_4210 111 IASQEVK|KI 0.087 . cgd5_4210 112 ASQEVKK|II 0.109 . cgd5_4210 136 DCSYWER|VL 0.096 . cgd5_4210 140 WERVLSK|LC 0.062 . cgd5_4210 143 VLSKLCR|LY 0.090 . cgd5_4210 148 CRLYELR|NG 0.080 . cgd5_4210 152 ELRNGER|IS 0.076 . cgd5_4210 160 SVAGASK|MI 0.073 . cgd5_4210 170 NIFFHYR|AY 0.107 . cgd5_4210 185 MIAGFDK|DG 0.065 . cgd5_4210 199 VDNEGSR|VK 0.077 . cgd5_4210 201 NEGSRVK|DC 0.067 . cgd5_4210 204 SRVKDCK|FS 0.084 . cgd5_4210 223 VLDSGYR|YD 0.073 . cgd5_4210 236 EAIDLGK|RA 0.061 . cgd5_4210 237 AIDLGKR|AI 0.124 . cgd5_4210 245 IVIATNR|DG 0.111 . cgd5_4210 254 GSGGLVR|VY 0.081 . cgd5_4210 260 RVYQINK|NG 0.052 . cgd5_4210 265 NKNGVIK|HV 0.095 . cgd5_4210 281 LHYAYSK|KQ 0.065 . cgd5_4210 282 HYAYSKK|QG 0.118 . cgd5_4210 289 QGTDPTK|M- 0.065 . ____________________________^_________________

  • Fasta :-

    >cgd5_4210 AGAAAGGGAGGAACAAGTTGTTTTTTTTAAAGAATAACAAAAGAATAGTTTATAACTTAA TTCAAGCCAATTGTGTTAAAGATTGCAAAATAGTTTGTTATATTGCATTACTTTTCTGTT AATTTTTTTCGTAAATAATCCATACAAGTTTGTAAAAAAAATGACTTTTGATTTTTTGGA TTCAGGCATTGAAGCAATCAACCACTATGGAATAAGAAATGAGAATTTGAAAAATTCAGG ATTTTTAAGATTGGATTTCTTTGGAAATGATAAAGATGAAGAAGATTTTGTGGAAAGAAT ATATGAAGAAACTTTTCAATATGCAAAGATTGAAAATCCATGTAAATTTGTAAGTGAATA TAATAAAGGAGAGATCAGAAAGATGATGAATAGAGGTACTACAACATTAGGATTCATTTA TCAAGGAGGAGTAATATTAGCAGTTGATAGTAGAGCATCACAAGGAAGTTATATTGCAAG TCAAGAAGTGAAAAAGATTATTCAGATTAATGATTTCTTATTAGGAACTATGGCAGGAGG TGCAGCAGATTGTTCATATTGGGAAAGAGTACTTTCAAAGTTATGTAGACTTTATGAACT TAGAAATGGAGAAAGAATTAGTGTAGCGGGAGCTTCGAAGATGATCACCAATATATTCTT CCATTATAGAGCTTATGATCTTTCTGCAGGAATTATGATTGCAGGATTTGATAAAGATGG TCCTCATCTGTATTATGTAGATAATGAAGGATCTAGAGTAAAAGATTGTAAATTTTCTGT TGGATCAGGTTCTTTATATGCTTATGGTGTTTTAGACAGTGGGTATAGATATGATTTAAC TGATGAAGAAGCTATTGATCTTGGAAAGAGAGCTATTGTAATTGCAACAAACAGAGATGG TGGTTCAGGAGGTCTTGTTAGAGTTTATCAAATAAATAAAAATGGTGTTATTAAGCATGT ACCAGGAGAAGATGTTTCTGAACTTCATTATGCATACTCTAAAAAACAAGGCACTGATCC AACAAAAATGTAATTTTATCTTTTTTTTCAATATGTGAAAGTATATATTATTGATTTCAA TAACTTAGTAAATATTTCAACTTTTTCTAGCTAAA
  • Download Fasta

  • Fasta :-

    MTFDFLDSGIEAINHYGIRNENLKNSGFLRLDFFGNDKDEEDFVERIYEETFQYAKIENP CKFVSEYNKGEIRKMMNRGTTTLGFIYQGGVILAVDSRASQGSYIASQEVKKIIQINDFL LGTMAGGAADCSYWERVLSKLCRLYELRNGERISVAGASKMITNIFFHYRAYDLSAGIMI AGFDKDGPHLYYVDNEGSRVKDCKFSVGSGSLYAYGVLDSGYRYDLTDEEAIDLGKRAIV IATNRDGGSGGLVRVYQINKNGVIKHVPGEDVSELHYAYSKKQGTDPTKM

  • title: active site
  • coordinates: T80,D96,R98,K112,S209,D246,S249,G250
IDSitePositionGscoreIscore
cgd5_4210T2880.5130.276
IDSitePositionGscoreIscore
cgd5_4210T2880.5130.276
No Results

cgd5_4210      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India