cgd6_3550 | tRNA N6-adenosine threonylcarbamoyltransferase Kae1/OSGEP

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_IDPredictionOTHERSPmTPCS_Position
cgd6_3550OTHER0.9995950.0003110.000094
No Results

  • Fasta :-

    >cgd6_3550 MEGSNNEVLISLGIESSANKVGVGIVTSKGEILANEKMTFVGPPGSGFLPRETAEFHRNN ILHLVKQALEKSGINKNSITIISFTQGPGMGAPLAVGALVARMLSMLWSKPLIGVNHCVA HIEMGRLVTKVENPIVLYASGGNTQIIGYANKRYKILGETLDIAIGNCIDRFARVMKLDN YPAAGYHIEQMAKKGKNLISLPYVVKGMDLSFSGILTFGEELIAEKQKEFNNDEQKLQSF YQDFCFSLQETLFAMLIEVTERAISLLNSDSILLVGGVGCNLRLIEMMEQMAKDRGAIVC SMDDSYCIDNGAMIAHTGLLAYQKNFITKVEESAVSQRFRTDQVEILWRE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd6_3550.fa Sequence name : cgd6_3550 Sequence length : 350 VALUES OF COMPUTED PARAMETERS Coef20 : 3.513 CoefTot : 0.000 ChDiff : -4 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.406 1.582 0.207 0.551 MesoH : 0.242 0.689 -0.180 0.343 MuHd_075 : 22.957 17.208 7.890 4.978 MuHd_095 : 10.856 3.599 1.775 0.752 MuHd_100 : 2.732 3.905 1.603 0.830 MuHd_105 : 10.386 6.333 3.678 1.464 Hmax_075 : 13.650 15.283 3.060 5.273 Hmax_095 : 8.000 8.600 0.032 2.887 Hmax_100 : 3.400 6.600 -0.311 2.800 Hmax_105 : 4.300 7.300 -0.312 3.313 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9626 0.0374 DFMC : 0.9446 0.0554
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 350 cgd6_3550 MEGSNNEVLISLGIESSANKVGVGIVTSKGEILANEKMTFVGPPGSGFLPRETAEFHRNNILHLVKQALEKSGINKNSIT 80 IISFTQGPGMGAPLAVGALVARMLSMLWSKPLIGVNHCVAHIEMGRLVTKVENPIVLYASGGNTQIIGYANKRYKILGET 160 LDIAIGNCIDRFARVMKLDNYPAAGYHIEQMAKKGKNLISLPYVVKGMDLSFSGILTFGEELIAEKQKEFNNDEQKLQSF 240 YQDFCFSLQETLFAMLIEVTERAISLLNSDSILLVGGVGCNLRLIEMMEQMAKDRGAIVCSMDDSYCIDNGAMIAHTGLL 320 AYQKNFITKVEESAVSQRFRTDQVEILWRE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd6_3550 20 IESSANK|VG 0.060 . cgd6_3550 29 VGIVTSK|GE 0.061 . cgd6_3550 37 EILANEK|MT 0.064 . cgd6_3550 51 GSGFLPR|ET 0.119 . cgd6_3550 58 ETAEFHR|NN 0.085 . cgd6_3550 66 NILHLVK|QA 0.058 . cgd6_3550 71 VKQALEK|SG 0.075 . cgd6_3550 76 EKSGINK|NS 0.076 . cgd6_3550 102 VGALVAR|ML 0.102 . cgd6_3550 110 LSMLWSK|PL 0.072 . cgd6_3550 126 AHIEMGR|LV 0.123 . cgd6_3550 130 MGRLVTK|VE 0.064 . cgd6_3550 152 IIGYANK|RY 0.061 . cgd6_3550 153 IGYANKR|YK 0.183 . cgd6_3550 155 YANKRYK|IL 0.090 . cgd6_3550 171 IGNCIDR|FA 0.110 . cgd6_3550 174 CIDRFAR|VM 0.131 . cgd6_3550 177 RFARVMK|LD 0.111 . cgd6_3550 193 HIEQMAK|KG 0.056 . cgd6_3550 194 IEQMAKK|GK 0.087 . cgd6_3550 196 QMAKKGK|NL 0.070 . cgd6_3550 206 SLPYVVK|GM 0.068 . cgd6_3550 226 EELIAEK|QK 0.057 . cgd6_3550 228 LIAEKQK|EF 0.069 . cgd6_3550 236 FNNDEQK|LQ 0.066 . cgd6_3550 262 LIEVTER|AI 0.089 . cgd6_3550 283 GVGCNLR|LI 0.111 . cgd6_3550 293 MMEQMAK|DR 0.093 . cgd6_3550 295 EQMAKDR|GA 0.111 . cgd6_3550 324 GLLAYQK|NF 0.065 . cgd6_3550 329 QKNFITK|VE 0.076 . cgd6_3550 338 ESAVSQR|FR 0.135 . cgd6_3550 340 AVSQRFR|TD 0.104 . cgd6_3550 349 QVEILWR|E- 0.082 . ____________________________^_________________

  • Fasta :-

    >cgd6_3550 ATGGAGGGATCTAATAATGAAGTTCTAATTTCCCTTGGGATTGAGTCAAGCGCAAACAAG GTAGGAGTCGGAATAGTAACATCTAAAGGAGAAATCTTGGCAAATGAAAAAATGACATTT GTGGGACCACCTGGCTCTGGATTTTTACCCAGAGAAACTGCAGAATTTCATAGAAATAAT ATATTGCATTTGGTTAAACAGGCTTTAGAAAAATCCGGAATAAATAAGAATTCAATAACA ATTATTTCATTTACACAAGGACCAGGAATGGGTGCACCTTTAGCGGTTGGAGCTCTAGTT GCAAGAATGTTGAGCATGCTTTGGTCAAAACCTTTAATCGGAGTAAATCATTGCGTTGCT CACATAGAAATGGGAAGACTCGTAACTAAAGTTGAAAATCCTATAGTACTATATGCGTCA GGAGGAAACACTCAAATAATAGGTTATGCCAACAAAAGATACAAAATTTTAGGTGAAACT TTGGATATTGCAATCGGGAACTGCATTGATAGATTTGCTAGAGTTATGAAACTTGACAAT TATCCTGCAGCAGGATACCATATTGAACAAATGGCAAAAAAAGGAAAGAATTTAATTTCA CTTCCTTATGTTGTTAAAGGCATGGATTTATCATTTTCCGGAATTCTAACTTTTGGAGAA GAACTAATAGCAGAGAAACAAAAAGAATTTAATAATGATGAACAAAAATTACAATCTTTT TATCAAGATTTCTGCTTTTCTTTGCAAGAGACCCTTTTTGCAATGTTAATTGAAGTTACA GAAAGAGCAATCAGTCTATTAAACTCAGATTCAATCTTACTAGTCGGAGGTGTTGGATGC AATTTAAGGTTGATTGAAATGATGGAACAAATGGCAAAGGATAGAGGAGCTATTGTATGT AGCATGGATGATAGTTATTGCATTGATAACGGAGCAATGATTGCTCATACAGGATTATTA GCATACCAAAAAAATTTCATCACAAAAGTGGAAGAGTCTGCAGTATCTCAAAGATTTAGA ACTGATCAAGTTGAGATATTATGGAGAGAGTGA
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  • Fasta :-

    MEGSNNEVLISLGIESSANKVGVGIVTSKGEILANEKMTFVGPPGSGFLPRETAEFHRNN ILHLVKQALEKSGINKNSITIISFTQGPGMGAPLAVGALVARMLSMLWSKPLIGVNHCVA HIEMGRLVTKVENPIVLYASGGNTQIIGYANKRYKILGETLDIAIGNCIDRFARVMKLDN YPAAGYHIEQMAKKGKNLISLPYVVKGMDLSFSGILTFGEELIAEKQKEFNNDEQKLQSF YQDFCFSLQETLFAMLIEVTERAISLLNSDSILLVGGVGCNLRLIEMMEQMAKDRGAIVC SMDDSYCIDNGAMIAHTGLLAYQKNFITKVEESAVSQRFRTDQVEILWRE

  • title: nucleotide binding site
  • coordinates: E15,S16,S17,A18,K20,G22,H117,Y138,A139,S140,G141
No Results
No Results
IDSitePeptideScoreMethod
cgd6_3550265 SERAISLLNS0.993unsp

cgd6_3550      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India