cgd6_3580 | Derlin

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_IDPredictionOTHERSPmTPCS_Position
cgd6_3580OTHER0.9994940.0001770.000329
No Results

  • Fasta :-

    >cgd6_3580 MFNDSSPQGWYKNLPPITRSILTITFFSTLLITFGMLNPWYILFDWEYIFRKAQIWRFLT SFFFVGPFSIGWIMSQWMFTSFSSKLERSGSVGSSSGSYLYFILILMTGINIIGTAFDYP TGRKIGGSSLIFGIIYYWSKKFPTSLVSIWGFTLQAYQLPYALLFLDVLTGNSLIDDLIG LLAGHSYYYIRDIIYENNANNFLARTPKHFDKFVDYSSLLIKNYVYDFSSLNGHPNVINY PNSNVNRAGSSYNPFSGNSAQPRAFSGRGFRLGSD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd6_3580.fa Sequence name : cgd6_3580 Sequence length : 275 VALUES OF COMPUTED PARAMETERS Coef20 : 3.403 CoefTot : -1.419 ChDiff : 6 ZoneTo : 44 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.435 2.059 0.384 0.776 MesoH : 0.827 0.834 -0.053 0.460 MuHd_075 : 24.215 23.165 6.058 8.350 MuHd_095 : 40.363 24.379 10.140 8.664 MuHd_100 : 36.984 24.571 9.204 9.059 MuHd_105 : 31.211 23.275 8.793 8.459 Hmax_075 : 22.300 26.700 -0.614 8.800 Hmax_095 : 12.500 8.800 1.037 4.600 Hmax_100 : 12.500 15.000 1.037 6.180 Hmax_105 : 17.033 18.200 4.485 4.611 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3631 0.6369 DFMC : 0.5801 0.4199
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 275 cgd6_3580 MFNDSSPQGWYKNLPPITRSILTITFFSTLLITFGMLNPWYILFDWEYIFRKAQIWRFLTSFFFVGPFSIGWIMSQWMFT 80 SFSSKLERSGSVGSSSGSYLYFILILMTGINIIGTAFDYPTGRKIGGSSLIFGIIYYWSKKFPTSLVSIWGFTLQAYQLP 160 YALLFLDVLTGNSLIDDLIGLLAGHSYYYIRDIIYENNANNFLARTPKHFDKFVDYSSLLIKNYVYDFSSLNGHPNVINY 240 PNSNVNRAGSSYNPFSGNSAQPRAFSGRGFRLGSD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd6_3580 12 SPQGWYK|NL 0.077 . cgd6_3580 19 NLPPITR|SI 0.122 . cgd6_3580 51 DWEYIFR|KA 0.085 . cgd6_3580 52 WEYIFRK|AQ 0.083 . cgd6_3580 57 RKAQIWR|FL 0.124 . cgd6_3580 85 FTSFSSK|LE 0.065 . cgd6_3580 88 FSSKLER|SG 0.175 . cgd6_3580 123 FDYPTGR|KI 0.108 . cgd6_3580 124 DYPTGRK|IG 0.069 . cgd6_3580 140 IIYYWSK|KF 0.064 . cgd6_3580 141 IYYWSKK|FP 0.092 . cgd6_3580 191 HSYYYIR|DI 0.129 . cgd6_3580 205 ANNFLAR|TP 0.101 . cgd6_3580 208 FLARTPK|HF 0.197 . cgd6_3580 212 TPKHFDK|FV 0.121 . cgd6_3580 222 YSSLLIK|NY 0.062 . cgd6_3580 247 PNSNVNR|AG 0.125 . cgd6_3580 263 GNSAQPR|AF 0.176 . cgd6_3580 268 PRAFSGR|GF 0.141 . cgd6_3580 271 FSGRGFR|LG 0.246 . ____________________________^_________________

  • Fasta :-

    >cgd6_3580 ATGTTCAATGATTCATCTCCACAAGGTTGGTATAAGAACTTACCTCCAATCACGAGGAGT ATCCTCACAATAACATTTTTTTCAACTTTATTAATAACTTTTGGTATGTTGAATCCATGG TATATTCTCTTTGATTGGGAGTACATTTTTCGCAAGGCACAAATTTGGAGATTCCTCACA AGCTTCTTTTTTGTGGGTCCATTTAGTATTGGATGGATTATGAGCCAATGGATGTTTACA TCATTTTCATCAAAATTAGAGAGAAGTGGGTCGGTTGGTTCCTCATCTGGGTCTTATTTG TATTTTATATTGATTTTAATGACAGGAATTAACATAATAGGTACTGCTTTTGATTACCCC ACAGGAAGAAAAATTGGAGGCTCTTCATTGATTTTTGGTATAATTTATTACTGGAGTAAG AAATTCCCAACTTCTTTGGTAAGTATTTGGGGATTCACTTTGCAAGCTTATCAGTTACCA TATGCATTGTTATTTTTGGATGTTTTGACTGGTAACTCTTTGATTGACGATTTGATTGGA TTATTAGCTGGACATTCTTATTACTATATTAGAGATATTATATATGAGAATAACGCAAAT AACTTCTTAGCCAGAACTCCAAAGCATTTTGACAAATTTGTTGACTACTCTTCTTTACTG ATTAAGAACTATGTCTATGACTTTTCATCTTTAAATGGCCATCCTAATGTAATTAACTAT CCAAATTCAAATGTAAATAGAGCTGGTTCTTCTTACAATCCATTTTCAGGAAACTCTGCT CAACCTAGAGCCTTTTCAGGAAGGGGATTTAGGCTGGGTTCAGATTAA
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  • Fasta :-

    MFNDSSPQGWYKNLPPITRSILTITFFSTLLITFGMLNPWYILFDWEYIFRKAQIWRFLT SFFFVGPFSIGWIMSQWMFTSFSSKLERSGSVGSSSGSYLYFILILMTGINIIGTAFDYP TGRKIGGSSLIFGIIYYWSKKFPTSLVSIWGFTLQAYQLPYALLFLDVLTGNSLIDDLIG LLAGHSYYYIRDIIYENNANNFLARTPKHFDKFVDYSSLLIKNYVYDFSSLNGHPNVINY PNSNVNRAGSSYNPFSGNSAQPRAFSGRGFRLGSD

    No Results
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cgd6_3580      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India