cgd6_5520 | Metalloenzyme, LuxS/M16 peptidase-like

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd6_5520SP0.1803440.8143790.005277CS pos: 21-22. LHS-KH. Pr: 0.7470
No Results

  • Fasta :-

    >cgd6_5520 MTNISIIYTFILLFNLLNLHSKHCIFSLTNKTASIQDYLSHEKYIKEVIDNNQFLKHNYT ENKYRFIKLNNELDVFLISRPGKHTYGTLHIQVGSHNDPEYIPGLAHLLKQSLFINTKKY PEIYGFYKFIHLHFGETSAFTDLEYTRYYFKINSNVIEEALDRFSQSFIDPLFDEHFIEK EIININHENDIYKKQEYFNLSIIRKLTNNNNNNNETFKLEPILKEIDIRNEIIRFYQNEY SSNKMILVLTSNKSIDELTNLAIKYFSKIQNKQLPLKSFDEEIIFNHTNPYEYLKKKIIF AESIHKKNLITLYLPFETKLNGNEKLIIIYIIMKYINHNLNSNKFQYLNKKLLINDIKCH FYTQEIQFNLFKIYIELTINGIKNIEYILKEIYSAIIYIKENISFEQILQDYNHSQNEQY YNYVDDSPNNQIIDKYFNYKLMPKYVIINNIETNQINENTINSILSEIEPENMLILINTN KFNKLFDHFENNNKIVQKYKSLINTEFNIKYVKIENYTKIKYYITNTNESLIKLIKKNQI ENFKNYFNITSNTTNLIHPDYSNQVSNITK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd6_5520.fa Sequence name : cgd6_5520 Sequence length : 570 VALUES OF COMPUTED PARAMETERS Coef20 : 4.429 CoefTot : -0.231 ChDiff : 2 ZoneTo : 36 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.594 1.776 0.160 0.681 MesoH : -0.866 0.198 -0.572 0.205 MuHd_075 : 22.219 15.424 8.208 4.821 MuHd_095 : 24.423 21.182 9.986 5.154 MuHd_100 : 21.172 16.946 8.607 4.146 MuHd_105 : 22.886 18.332 6.773 5.621 Hmax_075 : 8.633 9.333 1.222 3.103 Hmax_095 : 16.625 17.238 4.262 5.215 Hmax_100 : 19.800 20.400 4.954 6.010 Hmax_105 : 19.833 20.533 2.688 7.140 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5518 0.4482 DFMC : 0.4865 0.5135 This protein is probably imported in chloroplast. f(Ser) = 0.1111 f(Arg) = 0.0000 CMi = 1.58730 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 570 cgd6_5520 MTNISIIYTFILLFNLLNLHSKHCIFSLTNKTASIQDYLSHEKYIKEVIDNNQFLKHNYTENKYRFIKLNNELDVFLISR 80 PGKHTYGTLHIQVGSHNDPEYIPGLAHLLKQSLFINTKKYPEIYGFYKFIHLHFGETSAFTDLEYTRYYFKINSNVIEEA 160 LDRFSQSFIDPLFDEHFIEKEIININHENDIYKKQEYFNLSIIRKLTNNNNNNNETFKLEPILKEIDIRNEIIRFYQNEY 240 SSNKMILVLTSNKSIDELTNLAIKYFSKIQNKQLPLKSFDEEIIFNHTNPYEYLKKKIIFAESIHKKNLITLYLPFETKL 320 NGNEKLIIIYIIMKYINHNLNSNKFQYLNKKLLINDIKCHFYTQEIQFNLFKIYIELTINGIKNIEYILKEIYSAIIYIK 400 ENISFEQILQDYNHSQNEQYYNYVDDSPNNQIIDKYFNYKLMPKYVIINNIETNQINENTINSILSEIEPENMLILINTN 480 KFNKLFDHFENNNKIVQKYKSLINTEFNIKYVKIENYTKIKYYITNTNESLIKLIKKNQIENFKNYFNITSNTTNLIHPD 560 YSNQVSNITK 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .......... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd6_5520 22 LLNLHSK|HC 0.073 . cgd6_5520 31 IFSLTNK|TA 0.076 . cgd6_5520 43 DYLSHEK|YI 0.064 . cgd6_5520 46 SHEKYIK|EV 0.077 . cgd6_5520 56 DNNQFLK|HN 0.072 . cgd6_5520 63 HNYTENK|YR 0.077 . cgd6_5520 65 YTENKYR|FI 0.100 . cgd6_5520 68 NKYRFIK|LN 0.103 . cgd6_5520 80 DVFLISR|PG 0.070 . cgd6_5520 83 LISRPGK|HT 0.244 . cgd6_5520 110 GLAHLLK|QS 0.065 . cgd6_5520 118 SLFINTK|KY 0.059 . cgd6_5520 119 LFINTKK|YP 0.114 . cgd6_5520 128 EIYGFYK|FI 0.075 . cgd6_5520 147 TDLEYTR|YY 0.103 . cgd6_5520 151 YTRYYFK|IN 0.068 . cgd6_5520 163 IEEALDR|FS 0.079 . cgd6_5520 180 DEHFIEK|EI 0.068 . cgd6_5520 193 HENDIYK|KQ 0.066 . cgd6_5520 194 ENDIYKK|QE 0.081 . cgd6_5520 204 FNLSIIR|KL 0.075 . cgd6_5520 205 NLSIIRK|LT 0.086 . cgd6_5520 218 NNNETFK|LE 0.060 . cgd6_5520 224 KLEPILK|EI 0.062 . cgd6_5520 229 LKEIDIR|NE 0.080 . cgd6_5520 234 IRNEIIR|FY 0.126 . cgd6_5520 244 NEYSSNK|MI 0.059 . cgd6_5520 253 LVLTSNK|SI 0.073 . cgd6_5520 264 LTNLAIK|YF 0.077 . cgd6_5520 268 AIKYFSK|IQ 0.071 . cgd6_5520 272 FSKIQNK|QL 0.060 . cgd6_5520 277 NKQLPLK|SF 0.084 . cgd6_5520 295 NPYEYLK|KK 0.059 . cgd6_5520 296 PYEYLKK|KI 0.102 . cgd6_5520 297 YEYLKKK|II 0.120 . cgd6_5520 306 FAESIHK|KN 0.054 . cgd6_5520 307 AESIHKK|NL 0.127 . cgd6_5520 319 YLPFETK|LN 0.062 . cgd6_5520 325 KLNGNEK|LI 0.075 . cgd6_5520 334 IIYIIMK|YI 0.073 . cgd6_5520 344 HNLNSNK|FQ 0.063 . cgd6_5520 350 KFQYLNK|KL 0.057 . cgd6_5520 351 FQYLNKK|LL 0.087 . cgd6_5520 358 LLINDIK|CH 0.061 . cgd6_5520 372 IQFNLFK|IY 0.058 . cgd6_5520 383 LTINGIK|NI 0.069 . cgd6_5520 390 NIEYILK|EI 0.065 . cgd6_5520 400 SAIIYIK|EN 0.065 . cgd6_5520 435 NNQIIDK|YF 0.070 . cgd6_5520 440 DKYFNYK|LM 0.059 . cgd6_5520 444 NYKLMPK|YV 0.075 . cgd6_5520 481 ILINTNK|FN 0.061 . cgd6_5520 484 NTNKFNK|LF 0.073 . cgd6_5520 494 HFENNNK|IV 0.070 . cgd6_5520 498 NNKIVQK|YK 0.087 . cgd6_5520 500 KIVQKYK|SL 0.105 . cgd6_5520 510 NTEFNIK|YV 0.071 . cgd6_5520 513 FNIKYVK|IE 0.052 . cgd6_5520 519 KIENYTK|IK 0.060 . cgd6_5520 521 ENYTKIK|YY 0.073 . cgd6_5520 533 TNESLIK|LI 0.064 . cgd6_5520 536 SLIKLIK|KN 0.061 . cgd6_5520 537 LIKLIKK|NQ 0.091 . cgd6_5520 544 NQIENFK|NY 0.062 . cgd6_5520 570 QVSNITK|-- 0.073 . ____________________________^_________________

  • Fasta :-

    >cgd6_5520 ATGACAAATATCTCAATAATATACACTTTTATCTTGTTATTTAATCTTCTTAATTTACAT TCAAAACATTGTATATTCTCACTTACAAATAAAACCGCCAGCATACAAGATTACTTATCT CATGAAAAATACATTAAAGAAGTTATTGATAACAATCAATTTCTCAAACACAATTATACG GAAAATAAGTACAGATTTATTAAATTAAATAATGAACTTGATGTTTTCCTTATTAGTAGA CCAGGAAAGCACACTTATGGTACTCTCCATATTCAAGTCGGAAGCCATAATGATCCCGAA TATATTCCTGGACTAGCACACCTACTAAAGCAGTCACTATTTATTAACACGAAAAAATAC CCGGAAATTTACGGTTTTTATAAATTTATTCATCTTCATTTTGGAGAAACAAGTGCTTTT ACTGATCTAGAATATACACGTTATTATTTTAAAATTAACTCTAATGTTATTGAAGAAGCT CTAGATAGATTTTCTCAATCTTTTATAGATCCTCTATTTGATGAACACTTTATTGAAAAA GAAATAATTAATATTAATCATGAAAATGATATTTATAAGAAACAGGAATACTTCAATTTA TCTATTATCAGAAAATTAACTAATAATAATAATAATAATAATGAAACTTTTAAACTAGAG CCTATATTAAAAGAAATTGACATTAGAAATGAAATTATCAGATTTTATCAAAATGAATAC TCCTCTAACAAAATGATTTTAGTGCTTACAAGTAATAAATCTATAGATGAATTAACTAAT CTTGCTATCAAATATTTTTCAAAAATTCAAAATAAACAACTACCTCTTAAATCATTTGAC GAAGAGATTATTTTTAATCATACAAATCCATATGAATATTTGAAAAAAAAAATCATTTTT GCTGAATCTATTCATAAAAAAAATTTAATCACTTTATACTTGCCATTTGAAACAAAATTA AATGGAAATGAAAAACTTATTATTATTTATATTATTATGAAATACATAAATCATAATTTG AATAGTAATAAATTTCAATATTTAAACAAAAAATTACTTATTAACGATATTAAATGTCAT TTTTATACACAAGAAATTCAATTCAATTTATTTAAAATTTACATAGAGCTGACAATTAAT GGAATTAAAAATATTGAATATATTTTAAAAGAAATTTACTCTGCTATAATATATATTAAA GAAAATATATCATTTGAACAAATTCTACAAGATTATAATCACTCTCAAAACGAACAATAT TATAATTACGTTGATGATTCTCCTAATAATCAAATTATAGATAAATATTTTAACTATAAA TTAATGCCAAAATATGTTATTATTAACAATATAGAAACTAATCAAATTAATGAAAACACA ATAAATAGTATTTTATCTGAAATTGAACCAGAAAATATGTTAATTTTAATTAATACTAAC AAGTTTAACAAACTTTTTGATCATTTTGAAAATAATAATAAAATTGTTCAAAAGTATAAA TCACTAATTAACACTGAATTTAATATAAAGTATGTAAAAATTGAAAATTATACAAAAATT AAATATTATATTACTAATACAAACGAATCATTAATCAAACTAATTAAAAAAAATCAAATA GAAAATTTCAAAAATTACTTTAACATTACTAGTAATACTACTAATTTAATACATCCTGAT TATTCAAATCAAGTTAGTAACATTACGAAATAA
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  • Fasta :-

    MTNISIIYTFILLFNLLNLHSKHCIFSLTNKTASIQDYLSHEKYIKEVIDNNQFLKHNYT ENKYRFIKLNNELDVFLISRPGKHTYGTLHIQVGSHNDPEYIPGLAHLLKQSLFINTKKY PEIYGFYKFIHLHFGETSAFTDLEYTRYYFKINSNVIEEALDRFSQSFIDPLFDEHFIEK EIININHENDIYKKQEYFNLSIIRKLTNNNNNNNETFKLEPILKEIDIRNEIIRFYQNEY SSNKMILVLTSNKSIDELTNLAIKYFSKIQNKQLPLKSFDEEIIFNHTNPYEYLKKKIIF AESIHKKNLITLYLPFETKLNGNEKLIIIYIIMKYINHNLNSNKFQYLNKKLLINDIKCH FYTQEIQFNLFKIYIELTINGIKNIEYILKEIYSAIIYIKENISFEQILQDYNHSQNEQY YNYVDDSPNNQIIDKYFNYKLMPKYVIINNIETNQINENTINSILSEIEPENMLILINTN KFNKLFDHFENNNKIVQKYKSLINTEFNIKYVKIENYTKIKYYITNTNESLIKLIKKNQI ENFKNYFNITSNTTNLIHPDYSNQVSNITK

    No Results
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IDSitePeptideScoreMethod
cgd6_5520466 SNSILSEIEP0.995unsp

cgd6_5520      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India