• Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004190      

  • Computed_GO_Functions:  aspartic-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

Loading, please wait...
_ID
Prediction
OTHER
SP
mTP
CS_Position
cgd6_840 OTHER 0.999055 0.000854 0.000090
Showing 1 to 1 of 1 rows
No Results
  • Fasta :-

    >cgd6_840 MGQACCNKSLMAYCLSYLVLALAILITNFKPLPIIVQMLMYTSSIIYIGSYLSLSQTIID PKTGEKDRSTESLSRKDAMMFPVIGSVALFSLYLAYKFLPVYWVNLLLTSYLFIIGAVAL METILQFISIVIYKCDDICKDTKLIIVDTHFNFFGYFENPDDPRGHEIKITIHHLWSLAL SLALGIIWIITDSWIIHNLFAIAFCIQAISLISIGSFKIGAILLCGLFVYDIFWVFGTDV MVTVAKSFQGPAKLIFPVSFDPWKQSILGLGDIVIPGLFISLCLRFDLKDYTKKHNQSLY HLISSSLQTPTFCTVLVSYLLGLITTACVMLYFKAAQPALLYLVPFCLISMVLSVVYRNK SSDAWNYSEEADSDERINDSKESSEEDKSQSKTSTRKKSDVLKQKKDD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd6_840.fa Sequence name : cgd6_840 Sequence length : 408 VALUES OF COMPUTED PARAMETERS Coef20 : 4.261 CoefTot : -0.182 ChDiff : -1 ZoneTo : 59 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.171 2.529 0.524 0.832 MesoH : 1.312 1.658 0.147 0.661 MuHd_075 : 28.184 26.966 11.689 5.744 MuHd_095 : 16.320 16.827 5.584 4.020 MuHd_100 : 21.796 20.969 7.474 5.686 MuHd_105 : 24.023 23.706 8.132 6.761 Hmax_075 : 18.400 23.100 8.008 5.620 Hmax_095 : 14.963 24.500 4.646 5.513 Hmax_100 : 16.800 19.300 3.707 6.310 Hmax_105 : 19.800 23.200 4.755 7.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7088 0.2912 DFMC : 0.4952 0.5048 This protein is probably imported in chloroplast. f(Ser) = 0.1186 f(Arg) = 0.0000 CMi = 1.69492 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 408 cgd6_840 MGQACCNKSLMAYCLSYLVLALAILITNFKPLPIIVQMLMYTSSIIYIGSYLSLSQTIIDPKTGEKDRSTESLSRKDAMM 80 FPVIGSVALFSLYLAYKFLPVYWVNLLLTSYLFIIGAVALMETILQFISIVIYKCDDICKDTKLIIVDTHFNFFGYFENP 160 DDPRGHEIKITIHHLWSLALSLALGIIWIITDSWIIHNLFAIAFCIQAISLISIGSFKIGAILLCGLFVYDIFWVFGTDV 240 MVTVAKSFQGPAKLIFPVSFDPWKQSILGLGDIVIPGLFISLCLRFDLKDYTKKHNQSLYHLISSSLQTPTFCTVLVSYL 320 LGLITTACVMLYFKAAQPALLYLVPFCLISMVLSVVYRNKSSDAWNYSEEADSDERINDSKESSEEDKSQSKTSTRKKSD 400 VLKQKKDD 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd6_840 8 GQACCNK|SL 0.088 . cgd6_840 30 ILITNFK|PL 0.064 . cgd6_840 62 QTIIDPK|TG 0.064 . cgd6_840 66 DPKTGEK|DR 0.064 . cgd6_840 68 KTGEKDR|ST 0.133 . cgd6_840 75 STESLSR|KD 0.074 . cgd6_840 76 TESLSRK|DA 0.166 . cgd6_840 97 SLYLAYK|FL 0.064 . cgd6_840 134 ISIVIYK|CD 0.070 . cgd6_840 140 KCDDICK|DT 0.068 . cgd6_840 143 DICKDTK|LI 0.061 . cgd6_840 164 ENPDDPR|GH 0.098 . cgd6_840 169 PRGHEIK|IT 0.088 . cgd6_840 218 ISIGSFK|IG 0.064 . cgd6_840 246 VMVTVAK|SF 0.076 . cgd6_840 253 SFQGPAK|LI 0.081 . cgd6_840 264 VSFDPWK|QS 0.070 . cgd6_840 285 FISLCLR|FD 0.073 . cgd6_840 289 CLRFDLK|DY 0.076 . cgd6_840 293 DLKDYTK|KH 0.064 . cgd6_840 294 LKDYTKK|HN 0.092 . cgd6_840 334 CVMLYFK|AA 0.069 . cgd6_840 358 VLSVVYR|NK 0.101 . cgd6_840 360 SVVYRNK|SS 0.090 . cgd6_840 376 EADSDER|IN 0.078 . cgd6_840 381 ERINDSK|ES 0.072 . cgd6_840 388 ESSEEDK|SQ 0.092 . cgd6_840 392 EDKSQSK|TS 0.060 . cgd6_840 396 QSKTSTR|KK 0.144 . cgd6_840 397 SKTSTRK|KS 0.076 . cgd6_840 398 KTSTRKK|SD 0.165 . cgd6_840 403 KKSDVLK|QK 0.076 . cgd6_840 405 SDVLKQK|KD 0.069 . cgd6_840 406 DVLKQKK|DD 0.102 . ____________________________^_________________
  • Fasta :-

    >cgd6_840 TGATAATAAAAAAAAAAAAAGAAGTGGCCCCCTTCTAAAAATTAAAATAATATTAAGAAA ATAAGGAAAAAGACTGATTCTTTTTTCTTTTTTTTGAAGAGGAACTTTAGCCTTATTTCT TGTAACACTCTTCTAATTAATCCATTAAGGAACTGAATTGAGTCACACAAATACACATTG TAAACATAAAACGAGTTAATAATGGGTCAAGCCTGTTGTAATAAGAGTTTAATGGCATAT TGCCTGAGCTACTTAGTTTTAGCTCTTGCAATTCTTATCACAAACTTTAAGCCTCTTCCA ATTATAGTTCAGATGTTAATGTACACGTCATCAATTATTTATATTGGATCTTATTTATCT CTTTCTCAAACAATTATTGATCCTAAAACGGGAGAGAAGGATCGAAGCACAGAGTCGCTT TCCAGGAAAGATGCAATGATGTTCCCAGTCATTGGTTCTGTTGCCTTGTTTTCACTATAT TTGGCATATAAATTTCTCCCTGTTTACTGGGTAAATTTGCTCTTGACTTCATACTTATTC ATAATTGGTGCAGTTGCACTAATGGAGACCATTTTACAGTTCATATCAATTGTAATTTAT AAATGTGATGATATTTGTAAAGATACTAAATTGATAATTGTTGACACTCATTTTAACTTC TTTGGATACTTTGAGAATCCAGATGATCCAAGAGGCCACGAAATTAAGATAACTATTCAT CATTTGTGGTCACTTGCACTTAGTTTGGCCCTTGGAATCATTTGGATAATAACAGATTCG TGGATTATTCACAATCTCTTTGCAATTGCTTTCTGTATCCAAGCAATCTCTCTCATTTCC ATTGGAAGTTTCAAAATTGGAGCTATTTTATTGTGTGGATTATTTGTTTATGATATATTT TGGGTATTTGGAACAGACGTTATGGTAACAGTTGCAAAATCTTTCCAAGGACCAGCTAAA CTCATCTTTCCTGTTTCATTTGATCCATGGAAACAAAGTATATTGGGTCTCGGAGATATT GTAATTCCTGGACTTTTCATATCTCTATGTTTGAGATTTGATCTCAAAGATTACACAAAG AAACATAATCAGAGTCTTTACCATTTGATTTCCAGCTCCCTACAAACCCCCACATTTTGC ACAGTTTTAGTCTCATATCTACTTGGACTCATTACAACCGCCTGTGTTATGTTATACTTT AAAGCAGCTCAACCTGCATTACTTTACTTGGTTCCATTCTGTCTTATTAGTATGGTCTTG TCTGTAGTGTATAGAAACAAGTCTTCTGATGCTTGGAATTATTCTGAGGAAGCTGACTCT GATGAAAGAATTAACGACTCCAAAGAGAGCTCCGAGGAGGATAAGTCACAGAGTAAAACT TCAACTAGAAAAAAATCAGATGTATTAAAACAAAAAAAGGATGATTGATTCTAACTTCAT TTTTTTTTTTTCCTCCCTAATTTCAAGAAATATCCACAAATTCAATCTAATAATTAGACT AGGGAAGAGGAGGAAATGAAAG
  • Download Fasta
  • Fasta :-

    MGQACCNKSLMAYCLSYLVLALAILITNFKPLPIIVQMLMYTSSIIYIGSYLSLSQTIID PKTGEKDRSTESLSRKDAMMFPVIGSVALFSLYLAYKFLPVYWVNLLLTSYLFIIGAVAL METILQFISIVIYKCDDICKDTKLIIVDTHFNFFGYFENPDDPRGHEIKITIHHLWSLAL SLALGIIWIITDSWIIHNLFAIAFCIQAISLISIGSFKIGAILLCGLFVYDIFWVFGTDV MVTVAKSFQGPAKLIFPVSFDPWKQSILGLGDIVIPGLFISLCLRFDLKDYTKKHNQSLY HLISSSLQTPTFCTVLVSYLLGLITTACVMLYFKAAQPALLYLVPFCLISMVLSVVYRNK SSDAWNYSEEADSDERINDSKESSEEDKSQSKTSTRKKSDVLKQKKDD

    No Results
    No Results
No Results
No Results
Loading, please wait...
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
cgd6_840 373 S EEADSDERI 0.993 unsp cgd6_840 373 S EEADSDERI 0.993 unsp cgd6_840 373 S EEADSDERI 0.993 unsp cgd6_840 380 S RINDSKESS 0.99 unsp cgd6_840 383 S DSKESSEED 0.997 unsp cgd6_840 384 S SKESSEEDK 0.998 unsp cgd6_840 389 S EEDKSQSKT 0.992 unsp cgd6_840 394 S QSKTSTRKK 0.993 unsp cgd6_840 69 S EKDRSTESL 0.994 unsp cgd6_840 74 S TESLSRKDA 0.998 unsp
Showing 1 to 1 of 1 rows

cgd6_840      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India