cgd6_920 | 26s protease regulatory subunit P45

_IDPredictionOTHERSPmTPCS_Position
cgd6_920OTHER0.9995820.0000590.000359
No Results

  • Fasta :-

    >cgd6_920 MLDSINPASSYYSKRIEHLKILIDSKKLDIRRLHAQRNELNSKVKELKDELQYLLESNSY VGEVIKVMGRNKVLVKLNPEGKFLVDVSKNIDISKCTTNTRVALLSDSFKLHRIFPNKVD PLVSLMKVEKVPDSTYDMVGGLDEQIKEIKEVIELPIKHPEIFESLGIAQPKGVLLYGPP GTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSLIFMDEID SIGSQRTEGESGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDDALLRPGRIDR KIEFPNPNEDARLEILKIHSRKMNLVRGIDLRKVAQQMQGASGAESKAVCTEAGMFALRE RRKHVTQEDFDMAVSRVMKKDSDWNMSLKKLWK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd6_920.fa Sequence name : cgd6_920 Sequence length : 393 VALUES OF COMPUTED PARAMETERS Coef20 : 3.706 CoefTot : -0.206 ChDiff : 4 ZoneTo : 16 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.394 0.788 -0.127 0.445 MesoH : -0.753 0.193 -0.408 0.177 MuHd_075 : 7.391 9.067 3.073 3.716 MuHd_095 : 35.358 24.264 10.949 7.079 MuHd_100 : 33.245 25.208 10.616 6.850 MuHd_105 : 21.307 18.939 7.381 4.720 Hmax_075 : -4.637 0.200 -3.433 1.977 Hmax_095 : 11.700 9.800 1.721 3.960 Hmax_100 : 13.900 14.400 2.463 5.240 Hmax_105 : 4.783 8.400 0.084 3.733 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8749 0.1251 DFMC : 0.9251 0.0749
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 393 cgd6_920 MLDSINPASSYYSKRIEHLKILIDSKKLDIRRLHAQRNELNSKVKELKDELQYLLESNSYVGEVIKVMGRNKVLVKLNPE 80 GKFLVDVSKNIDISKCTTNTRVALLSDSFKLHRIFPNKVDPLVSLMKVEKVPDSTYDMVGGLDEQIKEIKEVIELPIKHP 160 EIFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSLIFMDEID 240 SIGSQRTEGESGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDDALLRPGRIDRKIEFPNPNEDARLEILKIHS 320 RKMNLVRGIDLRKVAQQMQGASGAESKAVCTEAGMFALRERRKHVTQEDFDMAVSRVMKKDSDWNMSLKKLWK 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd6_920 14 ASSYYSK|RI 0.072 . cgd6_920 15 SSYYSKR|IE 0.194 . cgd6_920 20 KRIEHLK|IL 0.074 . cgd6_920 26 KILIDSK|KL 0.060 . cgd6_920 27 ILIDSKK|LD 0.097 . cgd6_920 31 SKKLDIR|RL 0.107 . cgd6_920 32 KKLDIRR|LH 0.089 . cgd6_920 37 RRLHAQR|NE 0.071 . cgd6_920 43 RNELNSK|VK 0.058 . cgd6_920 45 ELNSKVK|EL 0.082 . cgd6_920 48 SKVKELK|DE 0.073 . cgd6_920 66 YVGEVIK|VM 0.061 . cgd6_920 70 VIKVMGR|NK 0.068 . cgd6_920 72 KVMGRNK|VL 0.058 . cgd6_920 76 RNKVLVK|LN 0.062 . cgd6_920 82 KLNPEGK|FL 0.076 . cgd6_920 89 FLVDVSK|NI 0.072 . cgd6_920 95 KNIDISK|CT 0.066 . cgd6_920 101 KCTTNTR|VA 0.070 . cgd6_920 110 LLSDSFK|LH 0.065 . cgd6_920 113 DSFKLHR|IF 0.076 . cgd6_920 118 HRIFPNK|VD 0.062 . cgd6_920 127 PLVSLMK|VE 0.054 . cgd6_920 130 SLMKVEK|VP 0.065 . cgd6_920 147 GLDEQIK|EI 0.071 . cgd6_920 150 EQIKEIK|EV 0.070 . cgd6_920 158 VIELPIK|HP 0.060 . cgd6_920 172 LGIAQPK|GV 0.085 . cgd6_920 184 GPPGTGK|TL 0.059 . cgd6_920 189 GKTLLAR|AV 0.134 . cgd6_920 201 TDCTFIR|VS 0.131 . cgd6_920 210 GSELVQK|YI 0.105 . cgd6_920 217 YIGEGSR|MV 0.115 . cgd6_920 220 EGSRMVR|EL 0.260 . cgd6_920 227 ELFVMAR|EH 0.093 . cgd6_920 246 DSIGSQR|TE 0.114 . cgd6_920 258 GDSEVQR|TM 0.126 . cgd6_920 277 ESTQNIK|II 0.060 . cgd6_920 284 IIMATNR|ID 0.074 . cgd6_920 294 LDDALLR|PG 0.069 . cgd6_920 297 ALLRPGR|ID 0.223 . cgd6_920 300 RPGRIDR|KI 0.278 . cgd6_920 301 PGRIDRK|IE 0.073 . cgd6_920 312 NPNEDAR|LE 0.096 . cgd6_920 317 ARLEILK|IH 0.066 . cgd6_920 321 ILKIHSR|KM 0.080 . cgd6_920 322 LKIHSRK|MN 0.089 . cgd6_920 327 RKMNLVR|GI 0.108 . cgd6_920 332 VRGIDLR|KV 0.151 . cgd6_920 333 RGIDLRK|VA 0.087 . cgd6_920 347 ASGAESK|AV 0.111 . cgd6_920 359 AGMFALR|ER 0.085 . cgd6_920 361 MFALRER|RK 0.089 . cgd6_920 362 FALRERR|KH 0.350 . cgd6_920 363 ALRERRK|HV 0.171 . cgd6_920 376 FDMAVSR|VM 0.083 . cgd6_920 379 AVSRVMK|KD 0.188 . cgd6_920 380 VSRVMKK|DS 0.176 . cgd6_920 389 DWNMSLK|KL 0.072 . cgd6_920 390 WNMSLKK|LW 0.097 . cgd6_920 393 SLKKLWK|-- 0.069 . ____________________________^_________________

  • Fasta :-

    >cgd6_920 AATAAATAGAAGTAATTCTGTATTTATAAATAATTTAACAAATACTAATTTATAACTTGT TTGGATTATTTAAAATAAAGAAAGGAGAAGATGTTGGATTCAATAAATCCTGCATCATCC TATTACTCAAAAAGGATTGAGCATTTAAAAATTTTGATTGATTCAAAAAAATTGGATATA CGTAGATTACATGCACAGAGAAATGAACTAAATTCCAAAGTTAAAGAACTCAAGGATGAA TTACAATATCTATTGGAATCTAATAGTTATGTTGGAGAAGTTATAAAGGTAATGGGAAGA AATAAAGTATTGGTAAAGTTAAATCCAGAAGGAAAGTTTCTGGTTGATGTTTCTAAGAAT ATTGATATTTCAAAATGTACTACAAATACTAGAGTTGCATTATTGAGCGATTCATTTAAG CTTCACCGTATATTTCCTAACAAAGTAGATCCTTTGGTATCTTTAATGAAGGTTGAAAAA GTTCCAGATAGTACATATGATATGGTTGGTGGACTTGATGAACAGATTAAAGAAATTAAG GAGGTAATAGAACTTCCAATAAAACATCCTGAGATATTTGAAAGTTTGGGAATTGCTCAA CCGAAAGGAGTTCTATTATATGGTCCACCAGGTACTGGTAAGACTTTATTAGCAAGAGCT GTTGCTCATCATACAGATTGTACTTTTATTAGAGTATCTGGTTCTGAGCTTGTTCAAAAA TATATTGGAGAAGGAAGTAGAATGGTTAGAGAGTTATTTGTTATGGCTAGAGAACATGCT CCATCTTTAATTTTTATGGATGAAATTGACTCAATAGGATCACAAAGAACAGAAGGGGAA AGTGGTGACAGTGAAGTACAGAGGACAATGCTTGAACTTTTAAACCAATTGGATGGTTTT GAGTCAACACAAAACATTAAGATTATTATGGCAACCAATAGAATTGACATATTAGATGAT GCTCTTCTTAGACCTGGTCGTATTGATAGAAAGATAGAGTTCCCAAATCCAAATGAAGAT GCTAGATTAGAAATTCTCAAGATTCATAGTAGAAAGATGAACTTAGTTAGAGGAATTGAC TTAAGAAAGGTAGCTCAACAGATGCAAGGAGCATCTGGTGCTGAATCTAAAGCAGTTTGT ACTGAAGCTGGAATGTTTGCTTTAAGAGAGAGAAGGAAACATGTTACTCAAGAGGACTTC GATATGGCAGTTTCCAGGGTAATGAAAAAAGATAGTGATTGGAATATGAGTTTGAAGAAG TTATGGAAGTAAGTAGAGACGAGAACAATTTTCACTCAGAATGCTTTAGTGATCTAGGAG GAGAGAGACAAACAATATGCAATGCAAAACTTCTCTCTTTCTTTTGTATTAAAAAATTCC TCAATTCTACTTTTTTTTTGGATACCCTCAAATACACAATAATCAATCATAAGATACCTT TAAGATACCATTTTCTCTCCCCAAAATTTTAC
  • Download Fasta

  • Fasta :-

    MLDSINPASSYYSKRIEHLKILIDSKKLDIRRLHAQRNELNSKVKELKDELQYLLESNSY VGEVIKVMGRNKVLVKLNPEGKFLVDVSKNIDISKCTTNTRVALLSDSFKLHRIFPNKVD PLVSLMKVEKVPDSTYDMVGGLDEQIKEIKEVIELPIKHPEIFESLGIAQPKGVLLYGPP GTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSLIFMDEID SIGSQRTEGESGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDDALLRPGRIDR KIEFPNPNEDARLEILKIHSRKMNLVRGIDLRKVAQQMQGASGAESKAVCTEAGMFALRE RRKHVTQEDFDMAVSRVMKKDSDWNMSLKKLWK

    No Results
  • title: ATP binding site
  • coordinates: P179,P180,G181,T182,G183,K184,T185,L186,D237,N283
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd6_920134 SKVPDSTYDM0.997unspcgd6_920203 SFIRVSGSEL0.996unsp

cgd6_920      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India