cgd7_1080 | elf3f/JAB1/Mov34/MPN/PAD-1 ubiquitin protease

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd7_1080OTHER0.9999530.0000300.000017
No Results

  • Fasta :-

    >cgd7_1080 MSIYCAQNNIISESDGFLISHLSDTNLTFDSLSKPSIISCRVNPLVILSILDSHLRRQSG HQYVIGTLLGYINEGGNVIVTDSFVDRHSFTDDGMLSIMIDTHETMFELKQKTNSRLQVI GWYSTCSGINSVSCAVNNWFKTDIGSSKFQQTPLLSEPIHIVVDPSFSNGKLSINGYIQI QSTWTNSIVSIFRPIPLDIVASPCERLHISRILRPLLEKHHLNAVGIPPKSLPRTILGPE DEICTVLPLNNSNYSLQSGDVSQLLTKLILLVQRCQNYVKKVLSGEVSMDPMIGRQIDYA IHSIYDFEYNIYNIIKSNSTQDALIIGCLTELTRVQLSLSEKLQSLIIT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd7_1080.fa Sequence name : cgd7_1080 Sequence length : 349 VALUES OF COMPUTED PARAMETERS Coef20 : 3.926 CoefTot : -0.215 ChDiff : -5 ZoneTo : 12 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.118 1.571 0.222 0.561 MesoH : -0.161 0.329 -0.312 0.219 MuHd_075 : 13.942 9.532 4.950 2.312 MuHd_095 : 13.293 15.274 3.670 3.797 MuHd_100 : 12.014 13.972 2.896 4.162 MuHd_105 : 11.297 10.887 1.903 3.914 Hmax_075 : 8.662 13.650 2.156 4.025 Hmax_095 : 9.975 12.250 1.532 4.121 Hmax_100 : 12.300 15.800 2.030 5.470 Hmax_105 : 8.800 11.317 1.021 5.087 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9633 0.0367 DFMC : 0.9726 0.0274
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 349 cgd7_1080 MSIYCAQNNIISESDGFLISHLSDTNLTFDSLSKPSIISCRVNPLVILSILDSHLRRQSGHQYVIGTLLGYINEGGNVIV 80 TDSFVDRHSFTDDGMLSIMIDTHETMFELKQKTNSRLQVIGWYSTCSGINSVSCAVNNWFKTDIGSSKFQQTPLLSEPIH 160 IVVDPSFSNGKLSINGYIQIQSTWTNSIVSIFRPIPLDIVASPCERLHISRILRPLLEKHHLNAVGIPPKSLPRTILGPE 240 DEICTVLPLNNSNYSLQSGDVSQLLTKLILLVQRCQNYVKKVLSGEVSMDPMIGRQIDYAIHSIYDFEYNIYNIIKSNST 320 QDALIIGCLTELTRVQLSLSEKLQSLIIT 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd7_1080 34 TFDSLSK|PS 0.056 . cgd7_1080 41 PSIISCR|VN 0.085 . cgd7_1080 56 ILDSHLR|RQ 0.079 . cgd7_1080 57 LDSHLRR|QS 0.319 . cgd7_1080 87 TDSFVDR|HS 0.145 . cgd7_1080 110 ETMFELK|QK 0.064 . cgd7_1080 112 MFELKQK|TN 0.071 . cgd7_1080 116 KQKTNSR|LQ 0.079 . cgd7_1080 141 AVNNWFK|TD 0.060 . cgd7_1080 148 TDIGSSK|FQ 0.073 . cgd7_1080 171 PSFSNGK|LS 0.061 . cgd7_1080 193 SIVSIFR|PI 0.076 . cgd7_1080 206 VASPCER|LH 0.069 . cgd7_1080 211 ERLHISR|IL 0.097 . cgd7_1080 214 HISRILR|PL 0.249 . cgd7_1080 219 LRPLLEK|HH 0.059 . cgd7_1080 230 AVGIPPK|SL 0.076 . cgd7_1080 234 PPKSLPR|TI 0.086 . cgd7_1080 267 VSQLLTK|LI 0.061 . cgd7_1080 274 LILLVQR|CQ 0.077 . cgd7_1080 280 RCQNYVK|KV 0.083 . cgd7_1080 281 CQNYVKK|VL 0.145 . cgd7_1080 295 MDPMIGR|QI 0.137 . cgd7_1080 316 NIYNIIK|SN 0.092 . cgd7_1080 334 CLTELTR|VQ 0.058 . cgd7_1080 342 QLSLSEK|LQ 0.072 . ____________________________^_________________

  • Fasta :-

    >cgd7_1080 ATGTCAATATATTGTGCTCAAAATAACATTATTAGTGAAAGTGATGGATTTTTAATTTCA CACTTATCAGATACAAATTTGACTTTTGATTCATTATCAAAACCATCAATAATAAGTTGT AGAGTGAATCCATTGGTTATATTATCTATATTGGATTCTCATTTAAGAAGACAATCAGGA CATCAATATGTGATAGGAACTTTATTAGGATACATAAATGAAGGTGGGAATGTTATAGTA ACAGATTCTTTTGTAGATAGACATTCATTTACAGATGATGGTATGCTTTCAATAATGATA GATACTCATGAGACAATGTTTGAATTAAAACAAAAGACAAATTCTAGATTGCAGGTTATT GGATGGTATAGTACATGTTCTGGTATTAATTCAGTAAGTTGTGCAGTGAATAATTGGTTT AAGACAGATATTGGTAGTTCAAAATTTCAACAAACTCCATTATTATCTGAGCCTATTCAT ATTGTTGTGGATCCTTCATTTTCAAATGGAAAGTTATCTATTAATGGATATATTCAAATT CAATCAACATGGACAAATTCTATAGTTTCAATTTTTAGACCAATTCCATTAGATATTGTT GCAAGTCCATGTGAAAGACTTCATATTTCAAGAATTTTAAGACCATTACTTGAGAAACAT CATTTAAATGCTGTAGGAATTCCTCCAAAGAGTCTTCCTAGAACAATTCTTGGTCCAGAG GATGAAATATGTACAGTTTTACCTTTAAATAATTCAAATTATAGTTTACAATCTGGTGAT GTTTCTCAATTATTAACAAAACTTATTCTTCTAGTTCAGAGATGTCAGAATTATGTAAAG AAAGTACTTTCTGGTGAAGTTTCTATGGATCCAATGATAGGAAGACAAATTGATTATGCT ATTCATTCTATTTATGATTTTGAATATAATATTTATAATATCATTAAAAGCAATTCTACT CAAGATGCATTAATTATTGGATGTTTGACAGAACTAACAAGAGTTCAACTTTCACTTTCA GAGAAACTTCAATCATTAATAATTACTTGA
  • Download Fasta

  • Fasta :-

    MSIYCAQNNIISESDGFLISHLSDTNLTFDSLSKPSIISCRVNPLVILSILDSHLRRQSG HQYVIGTLLGYINEGGNVIVTDSFVDRHSFTDDGMLSIMIDTHETMFELKQKTNSRLQVI GWYSTCSGINSVSCAVNNWFKTDIGSSKFQQTPLLSEPIHIVVDPSFSNGKLSINGYIQI QSTWTNSIVSIFRPIPLDIVASPCERLHISRILRPLLEKHHLNAVGIPPKSLPRTILGPE DEICTVLPLNNSNYSLQSGDVSQLLTKLILLVQRCQNYVKKVLSGEVSMDPMIGRQIDYA IHSIYDFEYNIYNIIKSNSTQDALIIGCLTELTRVQLSLSEKLQSLIIT

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd7_1080319 SIKSNSTQDA0.993unspcgd7_1080319 SIKSNSTQDA0.993unspcgd7_1080319 SIKSNSTQDA0.993unspcgd7_108089 SVDRHSFTDD0.998unspcgd7_1080303 SYAIHSIYDF0.992unsp

cgd7_1080      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India