cgd7_2900 | 26S Proteasome non-ATPase regulatory subunit 7/8

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd7_2900OTHER0.9973040.0009390.001757
No Results

  • Fasta :-

    >cgd7_2900 MCLSGEHSGAALYKVNSSLSNRKNIIIHPIVLLSIVDHYNRIAKGTSKRVVGTLLGELHD EDGIHVTNSYALPFEEDSRDPMVWYLDHNYHEQMYLMFKKINTKEKIIGWYSTGPKTKVV DIDIHELFRKYCPDPLYLIADVTADDFEYLSSPISAYFSMDEPNSVLKKKFAHVPCTIGA FEAEEVGVEHLLRDLKNTSTSTLITQISDTINSCKILVSKLKESKNYLNDIVEGRIPPNH SIISVLQDIFNLLPDLREPEAIYAFSNRYADMILTIYGMSCLRSVLSMNDLVNNVSENRT AFEASMKTCNSDL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd7_2900.fa Sequence name : cgd7_2900 Sequence length : 313 VALUES OF COMPUTED PARAMETERS Coef20 : 3.851 CoefTot : -1.527 ChDiff : -10 ZoneTo : 56 KR : 7 DE : 2 CleavSite : 51 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.200 1.382 0.196 0.491 MesoH : -0.899 0.221 -0.437 0.167 MuHd_075 : 33.018 29.175 12.630 7.391 MuHd_095 : 48.993 28.015 12.721 10.550 MuHd_100 : 45.516 26.123 12.703 9.762 MuHd_105 : 42.756 25.312 12.246 9.540 Hmax_075 : 20.533 30.800 6.214 9.100 Hmax_095 : 12.338 14.350 2.680 4.944 Hmax_100 : 13.700 16.800 3.084 5.830 Hmax_105 : 14.117 17.500 3.286 6.078 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3618 0.6382 DFMC : 0.3967 0.6033 This protein is probably imported in mitochondria. f(Ser) = 0.1250 f(Arg) = 0.0536 CMi = 0.86207 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 313 cgd7_2900 MCLSGEHSGAALYKVNSSLSNRKNIIIHPIVLLSIVDHYNRIAKGTSKRVVGTLLGELHDEDGIHVTNSYALPFEEDSRD 80 PMVWYLDHNYHEQMYLMFKKINTKEKIIGWYSTGPKTKVVDIDIHELFRKYCPDPLYLIADVTADDFEYLSSPISAYFSM 160 DEPNSVLKKKFAHVPCTIGAFEAEEVGVEHLLRDLKNTSTSTLITQISDTINSCKILVSKLKESKNYLNDIVEGRIPPNH 240 SIISVLQDIFNLLPDLREPEAIYAFSNRYADMILTIYGMSCLRSVLSMNDLVNNVSENRTAFEASMKTCNSDL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ......................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd7_2900 14 SGAALYK|VN 0.065 . cgd7_2900 22 NSSLSNR|KN 0.107 . cgd7_2900 23 SSLSNRK|NI 0.079 . cgd7_2900 41 IVDHYNR|IA 0.075 . cgd7_2900 44 HYNRIAK|GT 0.219 . cgd7_2900 48 IAKGTSK|RV 0.071 . cgd7_2900 49 AKGTSKR|VV 0.465 . cgd7_2900 79 PFEEDSR|DP 0.076 . cgd7_2900 99 QMYLMFK|KI 0.073 . cgd7_2900 100 MYLMFKK|IN 0.099 . cgd7_2900 104 FKKINTK|EK 0.062 . cgd7_2900 106 KINTKEK|II 0.099 . cgd7_2900 116 WYSTGPK|TK 0.060 . cgd7_2900 118 STGPKTK|VV 0.101 . cgd7_2900 129 DIHELFR|KY 0.077 . cgd7_2900 130 IHELFRK|YC 0.081 . cgd7_2900 168 EPNSVLK|KK 0.073 . cgd7_2900 169 PNSVLKK|KF 0.142 . cgd7_2900 170 NSVLKKK|FA 0.168 . cgd7_2900 193 GVEHLLR|DL 0.099 . cgd7_2900 196 HLLRDLK|NT 0.118 . cgd7_2900 215 DTINSCK|IL 0.067 . cgd7_2900 220 CKILVSK|LK 0.061 . cgd7_2900 222 ILVSKLK|ES 0.067 . cgd7_2900 225 SKLKESK|NY 0.057 . cgd7_2900 235 NDIVEGR|IP 0.070 . cgd7_2900 257 NLLPDLR|EP 0.075 . cgd7_2900 268 IYAFSNR|YA 0.192 . cgd7_2900 283 YGMSCLR|SV 0.110 . cgd7_2900 299 NNVSENR|TA 0.084 . cgd7_2900 307 AFEASMK|TC 0.062 . ____________________________^_________________

  • Fasta :-

    >cgd7_2900 ATGTGTCTAAGCGGAGAACATTCAGGTGCTGCATTGTACAAAGTAAATTCCAGTTTAAGT AATCGAAAAAACATTATTATTCACCCAATTGTGCTTTTATCAATTGTAGATCATTATAAT AGGATTGCAAAGGGTACTTCAAAAAGGGTAGTTGGCACATTGCTAGGAGAACTTCATGAT GAAGATGGAATTCACGTTACAAATAGTTACGCTTTACCTTTTGAGGAGGATTCAAGGGAC CCAATGGTTTGGTATCTAGATCACAATTATCATGAACAAATGTATTTAATGTTTAAAAAG ATCAATACAAAAGAGAAAATCATTGGTTGGTACAGCACTGGCCCCAAAACCAAGGTTGTT GATATCGATATACATGAGTTATTTAGAAAATATTGCCCTGACCCATTATATTTAATTGCT GATGTAACTGCGGATGATTTTGAATATTTGTCAAGTCCAATTAGCGCTTATTTTTCAATG GACGAACCCAATAGTGTCTTAAAGAAAAAGTTTGCGCATGTTCCATGTACGATTGGCGCA TTCGAAGCAGAGGAAGTTGGTGTGGAACACCTATTGAGAGACCTTAAAAATACGTCAACC TCTACTCTTATTACGCAAATTTCAGATACAATTAACTCTTGTAAAATACTTGTCTCTAAA TTAAAAGAATCCAAAAACTATTTGAATGATATAGTTGAAGGTAGGATACCTCCAAATCAC AGCATTATTTCTGTCCTTCAAGATATTTTTAACTTGCTTCCAGACTTGAGAGAGCCAGAA GCGATTTATGCATTTTCAAATAGGTATGCGGATATGATTCTAACAATATATGGGATGAGT TGCTTACGTTCTGTGCTTTCTATGAATGACCTAGTCAATAATGTTTCCGAGAATAGGACA GCCTTTGAAGCGAGTATGAAAACTTGTAACTCTGATTTATAG
  • Download Fasta

  • Fasta :-

    MCLSGEHSGAALYKVNSSLSNRKNIIIHPIVLLSIVDHYNRIAKGTSKRVVGTLLGELHD EDGIHVTNSYALPFEEDSRDPMVWYLDHNYHEQMYLMFKKINTKEKIIGWYSTGPKTKVV DIDIHELFRKYCPDPLYLIADVTADDFEYLSSPISAYFSMDEPNSVLKKKFAHVPCTIGA FEAEEVGVEHLLRDLKNTSTSTLITQISDTINSCKILVSKLKESKNYLNDIVEGRIPPNH SIISVLQDIFNLLPDLREPEAIYAFSNRYADMILTIYGMSCLRSVLSMNDLVNNVSENRT AFEASMKTCNSDL

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cgd7_2900      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India