cgd8_3200 | Ubiquitin carboxyl-terminal hydrolase, family 1

_IDPredictionOTHERSPmTPCS_Position
cgd8_3200OTHER0.9998490.0001030.000048
No Results

  • Fasta :-

    >cgd8_3200 MNKKNKIWKPLISDPKLLEEYSVGLGVKSKISFIDIYTTEETEFYFCGINPISLIALVPI NDEKICKKRNKLGCEMNISQSVWFMKQYITNSCSAVALLHSILNNDKIELEEESIAKMLL NLKGDPNDLPEERGFYLINDKNIEYLHEELSSRDLTKDCDQSEFHYVSFVNNHGHIIELD GRLPCPISHGVCKSDEFLKNTLKIIKENFILPIGINGKIAIVALCIK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd8_3200.fa Sequence name : cgd8_3200 Sequence length : 227 VALUES OF COMPUTED PARAMETERS Coef20 : 3.184 CoefTot : -0.739 ChDiff : -5 ZoneTo : 13 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.606 2.065 0.326 0.719 MesoH : -0.708 0.308 -0.396 0.202 MuHd_075 : 19.283 18.384 5.264 5.018 MuHd_095 : 15.100 11.275 4.789 3.964 MuHd_100 : 23.102 16.618 6.811 6.021 MuHd_105 : 27.801 19.138 7.748 7.245 Hmax_075 : 5.500 11.000 -0.802 4.130 Hmax_095 : -6.600 2.500 -3.984 1.830 Hmax_100 : 5.000 7.600 -1.969 3.670 Hmax_105 : -3.100 10.400 -2.323 2.940 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9714 0.0286 DFMC : 0.9659 0.0341
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 227 cgd8_3200 MNKKNKIWKPLISDPKLLEEYSVGLGVKSKISFIDIYTTEETEFYFCGINPISLIALVPINDEKICKKRNKLGCEMNISQ 80 SVWFMKQYITNSCSAVALLHSILNNDKIELEEESIAKMLLNLKGDPNDLPEERGFYLINDKNIEYLHEELSSRDLTKDCD 160 QSEFHYVSFVNNHGHIIELDGRLPCPISHGVCKSDEFLKNTLKIIKENFILPIGINGKIAIVALCIK 240 ................................................................................ 80 ................................................................................ 160 ................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd8_3200 3 ----MNK|KN 0.058 . cgd8_3200 4 ---MNKK|NK 0.087 . cgd8_3200 6 -MNKKNK|IW 0.078 . cgd8_3200 9 KKNKIWK|PL 0.073 . cgd8_3200 16 PLISDPK|LL 0.062 . cgd8_3200 28 SVGLGVK|SK 0.072 . cgd8_3200 30 GLGVKSK|IS 0.073 . cgd8_3200 64 VPINDEK|IC 0.058 . cgd8_3200 67 NDEKICK|KR 0.060 . cgd8_3200 68 DEKICKK|RN 0.080 . cgd8_3200 69 EKICKKR|NK 0.217 . cgd8_3200 71 ICKKRNK|LG 0.065 . cgd8_3200 86 QSVWFMK|QY 0.074 . cgd8_3200 107 SILNNDK|IE 0.056 . cgd8_3200 117 EEESIAK|ML 0.059 . cgd8_3200 123 KMLLNLK|GD 0.056 . cgd8_3200 133 NDLPEER|GF 0.076 . cgd8_3200 141 FYLINDK|NI 0.056 . cgd8_3200 153 HEELSSR|DL 0.107 . cgd8_3200 157 SSRDLTK|DC 0.140 . cgd8_3200 182 IIELDGR|LP 0.076 . cgd8_3200 193 ISHGVCK|SD 0.108 . cgd8_3200 199 KSDEFLK|NT 0.065 . cgd8_3200 203 FLKNTLK|II 0.057 . cgd8_3200 206 NTLKIIK|EN 0.060 . cgd8_3200 218 PIGINGK|IA 0.071 . cgd8_3200 227 IVALCIK|-- 0.061 . ____________________________^_________________

  • Fasta :-

    >cgd8_3200 ATGAACAAAAAAAACAAAATATGGAAACCTCTTATTTCTGATCCAAAATTACTTGAAGAG TATTCCGTTGGATTAGGTGTTAAATCTAAAATTAGCTTTATTGATATTTACACAACAGAA GAGACTGAATTTTATTTTTGTGGTATAAATCCAATTTCTTTAATAGCTTTAGTACCAATT AATGATGAAAAAATTTGCAAAAAGAGAAATAAATTAGGATGTGAAATGAATATCTCCCAG AGCGTTTGGTTCATGAAACAATACATTACGAATTCTTGCAGTGCAGTTGCGCTTTTACAT TCAATTTTGAATAATGATAAAATAGAACTTGAAGAAGAAAGCATCGCTAAAATGTTATTG AATTTAAAAGGTGATCCAAATGATCTACCCGAAGAAAGAGGGTTTTATTTAATAAATGAC AAGAATATTGAGTATCTACACGAAGAATTATCATCAAGAGATCTAACTAAGGACTGTGAT CAATCAGAGTTCCATTATGTATCTTTTGTAAATAATCATGGGCATATAATAGAATTAGAT GGAAGGCTTCCCTGTCCAATTAGCCACGGAGTATGCAAAAGTGATGAATTTCTTAAAAAC ACACTAAAAATCATAAAAGAAAATTTTATTTTGCCAATAGGAATAAATGGCAAAATAGCT ATTGTTGCATTGTGTATAAAATAG
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  • Fasta :-

    MNKKNKIWKPLISDPKLLEEYSVGLGVKSKISFIDIYTTEETEFYFCGINPISLIALVPI NDEKICKKRNKLGCEMNISQSVWFMKQYITNSCSAVALLHSILNNDKIELEEESIAKMLL NLKGDPNDLPEERGFYLINDKNIEYLHEELSSRDLTKDCDQSEFHYVSFVNNHGHIIELD GRLPCPISHGVCKSDEFLKNTLKIIKENFILPIGINGKIAIVALCIK

    No Results
  • title: catalytic site
  • coordinates: Q87,C93,H165,D180
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cgd8_3200      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India