The chart has 1 Y axis displaying Frequency of SSRs. Data ranges from 373148 to 1590364.
End of interactive chart.
The database contains a total of 6747645 SSRs mined in genomic sequences of 7 millet species (Figure 1)
Figure 2: Total mono - hexa and compound repeats
Bar chart with 8 bars.
The chart has 1 X axis displaying SSRs type.
The chart has 1 Y axis displaying Frequency of SSRs. Data ranges from 51547 to 4535764.
End of interactive chart.
Hexa-nucleotide repeats are the most abundant, followed by tri-nucleotide, tetra-nucleotide, di-nucleotide, mono-nucleotide, and penta-nucleotide repeats. Moreover, compound and overlapping compound SSRs were also detected (Figure 2)
Figure 3: Total SSRs in genic, non-genic, and overlapping of genic-non-genic region
Pie chart with 3 slices.
End of interactive chart.
A total of 4674560 SSRs are located in genic regions, while non-genic regions contain about 2049612 of SSRs. The genic-non-genic region has the lowest proportion of SSRs, constituting only 23473. It's worth noting that this low proportion may not be clearly visible on the Figure 3.
Figure 4: Top 10 motifs identified in millet species
Bar chart with 10 bars.
The chart has 1 X axis displaying Motifs.
The chart has 1 Y axis displaying Frequency of motifs. Data ranges from 38266 to 63362.
End of interactive chart.
Most frequent repeat units detected in millet species (Figure 4)